| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4034176 | NA (NA) | 29 (0.070) | 6/92 | NT | 9.0% | intergenic (+180/+90) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | CP009273 | = 4034200 | 359 (0.760) | intergenic (+204/+66) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
Only 100 of 413 total aligned reads displayed.
GAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGC > CP009273/4034124‑4034243 | aGGGTGGCGGGCAGGGCGCCCGCCATAAACTGCCAGGGGTCAAATTAAGCAGAAGGCCATCCTGACGG < 1:7279899‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGCCGG < 1:22965277‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:16574056‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:23948958‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:26471492‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:28576937‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:31257433‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:33109295‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:3655781‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:37061787‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:14485794‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:11617005‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:5233427‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:9172646‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG > 1:16952809‑M2/1‑67 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG > 1:2930983‑M2/1‑67 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG > 1:3187604‑M2/1‑67 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG > 1:32769577‑M2/1‑67 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG > 1:2167445‑M2/1‑67 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG > 1:25404046‑M2/1‑67 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG > 1:6016562‑M2/1‑67 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG > 1:14869280‑M2/1‑67 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG > 1:9549324‑M2/1‑67 (MQ=255) gggTGGCGGGCAGGCCGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG < 1:24891598‑M2/66‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCCGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:871516‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGCCGGA < 1:2773871‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:32309918‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:27186868‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:7776777‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:30009175‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:38707092‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:6663221‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:3383875‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:10379354‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:34345578‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:35769055‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:38160272‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:4183058‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:22391756‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:20229270‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:18175984‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:17373820‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:16380508‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:15774558‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:14635660‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:14378930‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:13438142‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCGGACGGA < 1:30262629‑M2/68‑1 (MQ=255) ggTGGCGGGCAGGACGCCTGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGAT < 1:19291247‑M2/68‑1 (MQ=255) ggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGAT < 1:25265841‑M2/68‑1 (MQ=255) ggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGAT < 1:3357701‑M2/68‑1 (MQ=255) ggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACCGAT < 1:1592217‑M2/68‑1 (MQ=255) ggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCAACCTGACGGAT < 1:1379265‑M2/68‑1 (MQ=255) gTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATG < 1:2107280‑M2/68‑1 (MQ=255) gTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA > 1:2471336‑M2/1‑66 (MQ=255) gTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA > 1:31810396‑M2/1‑66 (MQ=255) aCGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTctgc > 1:34553903‑M2/1‑61 (MQ=255) aCGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCa < 1:11051018/67‑1 (MQ=31) cgcccgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCAtt > 1:30639318/1‑68 (MQ=35) cgcccgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCAtt > 1:8236259/1‑68 (MQ=35) cgcccgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCAtt > 1:36062014/1‑68 (MQ=35) gcccgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTctgcttaat > 1:14024321‑M2/1‑59 (MQ=255) cccgccATAAACTGCCAGGCATCAAATTAAGCAGAACGCCATCCTGACGGATGGCCTTTTTGCATTgg < 1:565831/68‑1 (MQ=255) aTAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGa < 1:17635853/68‑1 (MQ=255) aaaCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaa < 1:7082102/68‑1 (MQ=255) aaaCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaa < 1:18952002/68‑1 (MQ=255) aCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTctgcttaatttgatgcctg < 1:27081745‑M2/67‑20 (MQ=255) aCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaaaa > 1:35425889/1‑68 (MQ=255) aCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaaaa > 1:23284595/1‑68 (MQ=255) aCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaaaa > 1:26271682/1‑68 (MQ=255) aCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaaaa > 1:29668345/1‑68 (MQ=255) aCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaaaa > 1:2129164/1‑68 (MQ=255) cTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGGCGGATGGCCGTcggctgaatatgctgcctgtg < 1:101306‑M2/68‑22 (MQ=255) cTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaaaaa > 1:475726/1‑68 (MQ=255) gCCAGGCATCAAATTAAGCCGAAGGCCATCCTGACGGATGGCCTTctgcttaatttgatgcctggcag > 1:39103614‑M2/1‑45 (MQ=255) gCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTctgcttaatttgatgcctggcag > 1:2800298‑M2/1‑45 (MQ=255) gCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTctgcttaatttgatgcctggcag > 1:19974956‑M2/1‑45 (MQ=255) gCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTctgcttaatttgatgcctggcag > 1:25125706‑M2/1‑45 (MQ=255) gCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTctgcttaatttgatgcctggcag > 1:12092267‑M2/1‑45 (MQ=255) gCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAAt > 1:24400926/1‑68 (MQ=255) cAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTctgcttaatttgatgcctggcagt > 1:29584778‑M2/1‑43 (MQ=255) cAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTctgcttaatttgatgcctggcagt > 1:36112800‑M2/1‑43 (MQ=255) cATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCgg < 1:33343894/67‑1 (MQ=255) cATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCgg < 1:11218835/67‑1 (MQ=255) tCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATg < 1:9344684/68‑1 (MQ=255) aaaTTAAGCAGAAGGCCATCCTGACGGATGTCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCg < 1:10662423/68‑1 (MQ=255) aTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGAc < 1:3783081/68‑1 (MQ=255) aTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGAc < 1:23655279/68‑1 (MQ=255) aTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGAc < 1:22116706/68‑1 (MQ=255) ttAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACg < 1:4463183/68‑1 (MQ=255) gCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGcgg > 1:9920358/1‑65 (MQ=255) gCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTg > 1:15296589/1‑67 (MQ=255) gCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTg > 1:25683381/1‑67 (MQ=255) gCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTg > 1:35173207/1‑67 (MQ=255) gCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTg > 1:28913734/1‑67 (MQ=255) gCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTg > 1:31686137/1‑67 (MQ=255) gCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTg > 1:20399531/1‑67 (MQ=255) aGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTgg < 1:12585579/66‑1 (MQ=40) aGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTgg < 1:25042807/66‑1 (MQ=40) aGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTgg < 1:37509753/66‑1 (MQ=40) | GAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGC > CP009273/4034124‑4034243 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |