| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4460267 | NA (NA) | 7 (0.020) | 5/98 | NT | NA | noncoding (70/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4460278 | NA (NA) | noncoding (81/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 473 total aligned reads displayed.
GGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTT > CP009273/4460201‑4460334 | ggATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATa < 1:28298087/68‑1 (MQ=255)ggATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATa < 1:36293225/68‑1 (MQ=255) tGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAg < 1:13664563/67‑1 (MQ=255) tGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGc < 1:21450058/68‑1 (MQ=255) tGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGc < 1:15043290/68‑1 (MQ=255) tGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGc < 1:31950996/68‑1 (MQ=255) tGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGc < 1:1874241/68‑1 (MQ=255) gcggcgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCg > 1:17667025/1‑68 (MQ=255) ggcgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGt < 1:28919723/67‑1 (MQ=255) aaaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCa > 1:34649811‑M2/1‑67 (MQ=255) aaaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCa > 1:26133848‑M2/1‑67 (MQ=255) tGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatca < 1:5043979‑M2/68‑5 (MQ=255) gCCTTATCCGGCCAACATTTTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcag > 1:3936967‑M2/1‑63 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcag < 1:36648832‑M2/67‑6 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcag < 1:23601124‑M2/67‑6 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcag < 1:3052420‑M2/67‑6 (MQ=255) aTCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAt < 1:17819023/68‑1 (MQ=255) aTCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAt < 1:27569325/68‑1 (MQ=255) aTCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAt > 1:6949951/1‑68 (MQ=255) aTCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAt < 1:33493279/68‑1 (MQ=255) aTCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAt < 1:4297989/68‑1 (MQ=255) tCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAtt > 1:25984293/1‑68 (MQ=255) tCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAtt > 1:35663153/1‑68 (MQ=255) tCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAtt > 1:474408/1‑68 (MQ=255) tCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGAGAAGCGTAGCGCATCAGGCGAtt > 1:37337141/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:30755578/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:24309291/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:9405696/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:20028340/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:10898229/1‑68 (MQ=255) ccAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGc < 1:16810000/67‑1 (MQ=255) aTAAATTGCAGGAATCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:35505886/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:8579997/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:29362702/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:32652278/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:23174239/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:19628759/68‑1 (MQ=255) aTAAAATGCAGGAAACACGACGGCCACCTAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:14593709/68‑1 (MQ=17) aaaTTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACt > 1:23430270/1‑68 (MQ=255) aTTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTa > 1:29134544/1‑68 (MQ=255) tGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAAt < 1:32759657/68‑1 (MQ=255) tGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAAt < 1:34333398/68‑1 (MQ=255) aGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCg > 1:31292171/1‑68 (MQ=255) aGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCg > 1:16057185/1‑68 (MQ=255) gAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg > 1:24711978/1‑67 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:2400474/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:25553338/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:626397/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:6929701/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:7539097/66‑1 (MQ=255) aTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGc < 1:38578236/67‑1 (MQ=255) aTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGc < 1:38826140/67‑1 (MQ=255) aTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCa < 1:11721566/68‑1 (MQ=255) cACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATg < 1:1318485/68‑1 (MQ=255) cGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGAt > 1:27832039/1‑68 (MQ=255) cGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGAt > 1:5443722/1‑68 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATa > 1:15895749/1‑68 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATa > 1:29687335/1‑68 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATa > 1:14760686/1‑68 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATa > 1:30994057/1‑68 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATa > 1:12791272/1‑67 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGc < 1:10399150/68‑1 (MQ=255) gCCTGATgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataag < 1:33048834‑M1/68‑62 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCg > 1:37418771/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCg > 1:20773025/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCg > 1:4067428/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCg > 1:34105926/1‑68 (MQ=255) cTGATgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggc > 1:22613356‑M1/1‑5 (MQ=255) cTGATgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataagg < 1:10715260‑M1/67‑63 (MQ=255) cTGATgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataagg < 1:25181206‑M1/67‑63 (MQ=255) cTGATgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataagg < 1:12642044‑M1/67‑63 (MQ=255) cTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCgg > 1:1128175/1‑68 (MQ=255) cTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCgg > 1:20577986/1‑68 (MQ=255) cTGACgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataagg < 1:37731789‑M1/67‑63 (MQ=255) tGATgcgcttcgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggca < 1:14187693‑M1/68‑65 (MQ=255) tGATgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggca < 1:12686745‑M1/68‑65 (MQ=255) tGATgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggca < 1:26863856‑M1/68‑65 (MQ=255) tGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGa < 1:38146711/68‑1 (MQ=255) tGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGa < 1:5655152/68‑1 (MQ=255) tgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggcatt < 1:21966524‑M1/67‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCTGGCATGATAGCCCGGAtt > 1:16981727/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:22042545/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:227700/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:10050075/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:21768199/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:7863880/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:8920856/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:913612/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:33925794/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:19333450/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:27188305/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:3836078/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:15387171/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:12237342/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:36133497/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:30033871/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:31628067/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt < 1:35029561/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:34514706/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:13902301/1‑67 (MQ=255) | GGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTT > CP009273/4460201‑4460334 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |