| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4460267 | NA (NA) | 7 (0.020) | 5/98 | NT | NA | noncoding (70/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4460278 | NA (NA) | noncoding (81/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 521 total aligned reads displayed.
AAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATT > CP009273/4460212‑4460345 | aaaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCa > 1:2424512‑M2/1‑67 (MQ=255)aaaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCa > 1:21584735‑M2/1‑67 (MQ=255) aaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCa < 1:26896692‑M2/67‑2 (MQ=255) tGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatca < 1:5043979‑M2/68‑5 (MQ=255) gCCTTATCCGGCCAACATTTTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcag > 1:3936967‑M2/1‑63 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCgtcag < 1:37731789‑M2/67‑6 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcag < 1:12642044‑M2/67‑6 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcag < 1:14016895‑M2/67‑6 (MQ=255) cTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcaggc < 1:33048834‑M2/68‑8 (MQ=255) aTCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAt > 1:37360536/1‑68 (MQ=255) aTCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAt < 1:28220903/68‑1 (MQ=255) aTCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAt > 1:10840422/1‑68 (MQ=255) aTCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGGAGCGCATCAGGCGAt < 1:36893652/68‑1 (MQ=255) tCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAtt > 1:27437418/1‑68 (MQ=255) tCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAtt > 1:30672903/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:29903650/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:1592922/1‑68 (MQ=255) ccAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGc < 1:2316264/67‑1 (MQ=255) ccAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGc < 1:16810000/67‑1 (MQ=255) aaTTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtc < 1:13851667/68‑1 (MQ=255) aaTTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtc < 1:12736155/68‑1 (MQ=255) ttCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcaggcctacgtgattcctgcaa > 1:12965118‑M2/1‑44 (MQ=255) aTAAATTGCAGGAATCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:35505886/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:29362702/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:32652278/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:21959944/68‑1 (MQ=255) tGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAAt < 1:37545332/68‑1 (MQ=255) tGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAAt < 1:35645125/68‑1 (MQ=255) tGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAAt < 1:34288285/68‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:24894908/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:626397/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:24569905/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:25355584/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:36485535/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:7539097/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:20260778/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:6729768/66‑1 (MQ=255) aTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGc < 1:38826140/67‑1 (MQ=255) aTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGc < 1:38578236/67‑1 (MQ=255) cACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATg > 1:25956410/1‑68 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATa > 1:22841151/1‑68 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATa > 1:30985386/1‑68 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATa > 1:14760686/1‑68 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAg > 1:8972851/1‑67 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGc < 1:10399150/68‑1 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGc < 1:23897043/65‑1 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCg > 1:11477285/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCg > 1:4067428/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCg > 1:38353883/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCg > 1:5483289/1‑68 (MQ=255) ccTGATAAGCGTAGCCCATCAGGCGATTTTGCGTTTCACATCAGACTTAATCCGCGCATGATAGCCCg > 1:13434383/1‑68 (MQ=25) cTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCgg > 1:23413535/1‑68 (MQ=255) cTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCgg > 1:22635092/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCTGGCATGATAGCCCGGAtt > 1:16981727/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:29114378/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:11118923/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:34514706/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt < 1:26702057/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:36133497/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:8864856/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:7863880/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:10050075/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:1503965/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:15357866/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:19333450/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCAGGAtt > 1:31772187/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTAATCAGACTTAATACGGGCATGATAGCCCGGAtt > 1:35187029/1‑67 (MQ=255) aaGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTc < 1:15718020/68‑1 (MQ=255) aGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTcc > 1:4709120/1‑68 (MQ=255) aGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTcc < 1:28765171/68‑1 (MQ=255) aGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTcc < 1:14505259/68‑1 (MQ=255) aGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTcc > 1:22251220/1‑68 (MQ=255) aGCGTAGCGCATCAGGCGATTTTGCGTTTGTCAACAGACTTAATCCGGGCATCATAGCCCGGATTTcc > 1:12411420/1‑68 (MQ=255) gTAGCGCATCAGGCGATTTTGCGTTTGTCGTCAGACTAAATCCGGGCATCATAGCCCGGATATCCATc > 1:34177884/1‑68 (MQ=37) gTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCAt < 1:27824658/67‑1 (MQ=255) gTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATc > 1:35888978/1‑68 (MQ=255) gTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATc > 1:12003774/1‑68 (MQ=255) gTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATc > 1:32782968/1‑68 (MQ=255) gTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATc > 1:7094356/1‑68 (MQ=255) gTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATc > 1:5815860/1‑68 (MQ=255) gTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATc > 1:5268657/1‑68 (MQ=255) gTAGCGCATCAGGCGAATTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCa < 1:18893910/66‑1 (MQ=255) aGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCaa > 1:9719360/1‑68 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAg < 1:8313994/66‑1 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGa < 1:4160585/67‑1 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGa < 1:12226622/67‑1 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGa < 1:38044346/67‑1 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGa < 1:20685717/67‑1 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGAt > 1:16173523/1‑68 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGAt > 1:9293658/1‑68 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGAt > 1:33992011/1‑68 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGAt > 1:33614824/1‑68 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGAt > 1:31292391/1‑68 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGAt > 1:30327258/1‑68 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGAt > 1:17512455/1‑68 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGAt > 1:18198579/1‑68 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGAt > 1:26176340/1‑68 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGAt > 1:21054665/1‑68 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGAt > 1:19714952/1‑68 (MQ=255) gcATCAGGCGATTTTGCGTTTGGCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAg < 1:34730312/66‑1 (MQ=255) | AAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATT > CP009273/4460212‑4460345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |