| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4604234 = | 506 (1.070) | 7 (0.020) | 5/106 | NT | 1.4% | noncoding (161/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | CP009273 | 4604400 = | 485 (1.090) | noncoding (327/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 624 total aligned reads displayed.
GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCC > CP009273/4604167‑4604300 | gcggAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGAc > 1:7992245/4‑68 (MQ=25)gCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGAc > 1:36889611/1‑68 (MQ=35)gCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGAc > 1:15363686/1‑68 (MQ=35)gCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGAc > 1:4876323/1‑68 (MQ=35) acttgtaggcctgataagacgcgtcaagcgtcgcatcaggcattgtgcgccaactgccggatgcggc < 1:20500096‑M1/1‑1 (MQ=255) cttgtaggcctgataagacgcgtcaagcgtcgcatcaggcattgtgcgccaactgccggatgcggcgc < 1:861673‑M1/3‑1 (MQ=255) cttgtaggcctgataagacgcgtcaagcgtcgcatcaggcattgtgcgccaactgccggatgcggcgc < 1:38299549‑M1/3‑1 (MQ=255) gAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCt < 1:6240783/68‑1 (MQ=35) aCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTg > 1:30497568/1‑68 (MQ=33) aCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTg > 1:16431542/1‑68 (MQ=33) aCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTg > 1:3877519/1‑68 (MQ=33) aCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTg > 1:6762709/1‑68 (MQ=33) aCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTg > 1:19149043/1‑68 (MQ=33) cGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTc > 1:22432374/1‑68 (MQ=35) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTcgcg < 1:9269281/68‑1 (MQ=40) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTcgcg < 1:18641061/68‑1 (MQ=40) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTcgcg < 1:31944204/68‑1 (MQ=40) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTcgcg > 1:34744018/1‑68 (MQ=40) ctgataagacgcgtcaagcgtcgcatcaggcattgtgcgccaactgccggatgcggCGCTTGAcgcg > 1:2825‑M1/57‑67 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTcgcg > 1:21598575/1‑66 (MQ=40) gCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTcgcg > 1:22914179/1‑66 (MQ=40) ccGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGt < 1:27349331/66‑1 (MQ=40) ccGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGt < 1:22023600/66‑1 (MQ=40) ccGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGt < 1:23300656/66‑1 (MQ=40) ccGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCt > 1:8251256/1‑68 (MQ=40) ccGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCt > 1:37407484/1‑68 (MQ=40) ccGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCt > 1:18088145/1‑68 (MQ=40) ccGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCt > 1:21337217/1‑68 (MQ=40) cGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCtt < 1:6460657/68‑1 (MQ=40) cGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCtt < 1:17720617/68‑1 (MQ=40) cGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCt < 1:29860226/67‑1 (MQ=40) ggATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTa < 1:38027417/68‑1 (MQ=40) aTAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTAt < 1:8906637/67‑1 (MQ=40) aTAAGGCGTTCACACCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTAt < 1:5617166/67‑1 (MQ=255) tAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCa > 1:26299047/1‑68 (MQ=40) gCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATg > 1:9529193/1‑66 (MQ=40) cGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGc < 1:3662179/66‑1 (MQ=40) cGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGc < 1:20772787/66‑1 (MQ=40) cGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGc < 1:35812673/66‑1 (MQ=40) cGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGc < 1:35677531/66‑1 (MQ=40) cGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGc < 1:10348911/66‑1 (MQ=40) cGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGc < 1:18210506/66‑1 (MQ=40) cGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGc < 1:25176176/66‑1 (MQ=40) cGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGc < 1:27539144/66‑1 (MQ=40) cGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCt > 1:12499284/1‑68 (MQ=40) cGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCt > 1:30942562/1‑68 (MQ=40) cGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCt > 1:10721085/1‑68 (MQ=40) cGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCt > 1:28820242/1‑68 (MQ=40) cGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCt > 1:19441067/1‑68 (MQ=40) cGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCt > 1:13744318/1‑68 (MQ=40) cGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCt > 1:5997261/1‑68 (MQ=40) gTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCt < 1:16051832/67‑1 (MQ=40) gTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCt < 1:27844369/67‑1 (MQ=40) gTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCt < 1:16221340/67‑1 (MQ=40) gTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCt < 1:32535692/67‑1 (MQ=40) aCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAg < 1:19969500/68‑1 (MQ=255) aCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAg < 1:37572468/68‑1 (MQ=255) aCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAg > 1:7307878/1‑68 (MQ=255) cgccgcATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGt < 1:11196742/68‑1 (MQ=40) ccgcATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAg > 1:12689485/1‑65 (MQ=40) gcATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCtgt < 1:11670156/68‑1 (MQ=40) gcATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCtgt < 1:3984218/68‑1 (MQ=40) gcATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCtgt < 1:5388267/68‑1 (MQ=40) gcATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCtgt < 1:31792642/68‑1 (MQ=40) gcATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCtgt < 1:35242655/68‑1 (MQ=40) cGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGa < 1:4333466/68‑1 (MQ=40) gCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGac > 1:2581604/1‑66 (MQ=255) gCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGaa > 1:34969660/1‑67 (MQ=40) cAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGGCTACAAGTCTGTGCCGagca > 1:29364428/1‑65 (MQ=255) cAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAAc < 1:14823777/67‑1 (MQ=40) cAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAAc < 1:23832975/67‑1 (MQ=40) cAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAAc < 1:24359311/67‑1 (MQ=40) aGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCg > 1:16802941/1‑68 (MQ=40) aGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCg > 1:13133833/1‑68 (MQ=40) aGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCg > 1:360994/1‑68 (MQ=40) gcACTATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCg < 1:21191211/68‑1 (MQ=255) gcACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCg < 1:20130220/68‑1 (MQ=255) gcACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCg < 1:17445318/68‑1 (MQ=255) cacaATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCgg > 1:26711971/1‑68 (MQ=255) acaATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCgg < 1:22656852/67‑1 (MQ=255) acaATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGa < 1:17169666/68‑1 (MQ=255) aaTGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATa > 1:24798676/1‑68 (MQ=40) aaTGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATa > 1:33008462/1‑68 (MQ=40) aTGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATaa > 1:27695562/1‑68 (MQ=40) gCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAgg < 1:1459282/68‑1 (MQ=40) gCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAgg < 1:25412331/68‑1 (MQ=40) gCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAgg < 1:25593493/68‑1 (MQ=40) ccTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGc > 1:13342068/1‑68 (MQ=40) tGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGt < 1:18910502/68‑1 (MQ=40) aTGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTc > 1:29694970/1‑68 (MQ=40) aTGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTc > 1:14301555/1‑68 (MQ=40) tGCGACGCTTGTCGCGTCTTATCATGCCTTCAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTc > 1:31574593/1‑67 (MQ=255) tGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTc > 1:31333921/1‑67 (MQ=40) tGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTc > 1:23584801/1‑67 (MQ=40) gCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCAc < 1:10075076/68‑1 (MQ=255) gCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCAc > 1:7718652/1‑68 (MQ=255) gCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCAc > 1:14069073/1‑68 (MQ=255) gCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCAc > 1:4599519/1‑68 (MQ=255) gCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCAc > 1:33787431/1‑68 (MQ=255) gCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCAc > 1:32129334/1‑68 (MQ=255) | GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCC > CP009273/4604167‑4604300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |