| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4604234 = | 506 (1.070) | 7 (0.020) | 5/106 | NT | 1.4% | noncoding (161/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | CP009273 | 4604400 = | 485 (1.090) | noncoding (327/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 678 total aligned reads displayed.
GCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGT > CP009273/4604336‑4604465 | gCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGcgccgc < 1:3795064/68‑1 (MQ=255)gCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGcgccgc > 1:695472/1‑68 (MQ=255) ttGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCAt < 1:25970175/68‑1 (MQ=255) ttGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCAt < 1:12759855/68‑1 (MQ=14) gTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATcc < 1:31149456/68‑1 (MQ=39) cgTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCa > 1:21108451/1‑68 (MQ=35) tCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGt > 1:367045/1‑68 (MQ=35) tCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCAGCAGt > 1:16153304/1‑68 (MQ=25) tCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGgc > 1:36196941/1‑67 (MQ=35) tCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGgc > 1:4937807/1‑67 (MQ=35) tCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGgc > 1:14901531/1‑67 (MQ=35) cATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCTCATCCGGCAGCTGgcgc > 1:28263121/1‑68 (MQ=255) cATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCTGTTGgcgc > 1:10958275/1‑68 (MQ=25) cATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGgcgc > 1:37583590/1‑68 (MQ=35) cATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGgcgc > 1:2034957/1‑68 (MQ=35) cATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGgcgc > 1:1165639/1‑68 (MQ=35) aTGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGca < 1:5483476/68‑1 (MQ=35) aTGCCTACAGCTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGca < 1:4515098/68‑1 (MQ=25) gCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGcaca < 1:581088/68‑1 (MQ=35) gCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGcaca > 1:26850932/1‑68 (MQ=35) cTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGTCGCACAAt < 1:34892115/68‑1 (MQ=25) cTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAAt > 1:30210920/1‑68 (MQ=35) tACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATg < 1:29048190/68‑1 (MQ=35) tACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATg < 1:29591492/68‑1 (MQ=35) tACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATg < 1:24533262/68‑1 (MQ=35) aCAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGc < 1:25630814/68‑1 (MQ=35) aCAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGc < 1:32374266/68‑1 (MQ=35) aCAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGc < 1:10027759/68‑1 (MQ=35) aCAGGGTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGc < 1:15430478/68‑1 (MQ=25) aGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATg > 1:21886835/1‑65 (MQ=35) aGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATg > 1:27878127/1‑65 (MQ=35) ggTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTg > 1:20033360/1‑68 (MQ=35) ggTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTg > 1:33783303/1‑68 (MQ=35) ggTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTg > 1:37262894/1‑68 (MQ=35) ggTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTg > 1:614534/1‑68 (MQ=35) ggTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTg > 1:9472700/1‑68 (MQ=35) ggTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTg > 1:25176646/1‑68 (MQ=35) ggTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATACGGCAGTTGGCGCACAATGCCTg > 1:32761761/1‑68 (MQ=25) tttGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTg < 1:3710689/66‑1 (MQ=35) tttGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGAt > 1:35798920/1‑68 (MQ=35) tttGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGAt > 1:4222743/1‑68 (MQ=35) tttGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGAt > 1:9686445/1‑68 (MQ=35) tttGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGAt > 1:19167420/1‑68 (MQ=35) tttGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGAt > 1:11308345/1‑68 (MQ=35) tttGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGAt > 1:13152564/1‑68 (MQ=35) tttGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATACGGCAGTTGGCGCACAATGCCTGAt > 1:33338685/1‑68 (MQ=25) gacGAACCGTAGGCCGGATAAGCCGTTCGCGCCGCATCAGGCATTTGGCGCACAATGCCTGTTGCGaa > 1:29236639/3‑67 (MQ=11) gCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATGCGGCAGTTGGCGCACAATGCCTGATGCGAc > 1:1573216/1‑68 (MQ=255) gCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGAc > 1:6768853/1‑68 (MQ=35) gCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGAc > 1:22731485/1‑68 (MQ=35) gCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGAc > 1:16605656/1‑68 (MQ=35) gCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGAc > 1:16843451/1‑68 (MQ=35) gAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCt < 1:24256496/68‑1 (MQ=35) aCCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCtt > 1:1420571/1‑67 (MQ=35) aCCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTg > 1:13631736/1‑68 (MQ=35) aCCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTg > 1:18170964/1‑68 (MQ=35) aCCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTg < 1:30686150/68‑1 (MQ=35) aCCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTg < 1:35338438/68‑1 (MQ=35) aCCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTg > 1:7245318/1‑68 (MQ=35) aGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGAcgcg < 1:38506228/68‑1 (MQ=40) aGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGAcgcg < 1:26182075/68‑1 (MQ=40) aGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGAcgcg < 1:34296257/68‑1 (MQ=40) aGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGAcgcg < 1:7945720/68‑1 (MQ=40) aGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGAcgcg < 1:25390573/68‑1 (MQ=40) aGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGAcgcg < 1:20848234/68‑1 (MQ=40) aGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGAcgcg < 1:28447412/68‑1 (MQ=40) aGGCCGGATAAGGCGTTAGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGAcgcg < 1:3648213/68‑1 (MQ=255) gCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGAcgcg > 1:5191040/1‑66 (MQ=40) gCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGAcgcg > 1:14584119/1‑66 (MQ=40) gCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGAcgcg > 1:28683605/1‑66 (MQ=40) ggATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTa < 1:7721584/68‑1 (MQ=40) ggATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTa < 1:13014244/68‑1 (MQ=40) aGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAgg < 1:23831825/68‑1 (MQ=255) aGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAgg < 1:27410240/68‑1 (MQ=255) aGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAgg < 1:17359383/68‑1 (MQ=255) gCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAgg > 1:27704011/1‑66 (MQ=255) gCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAgg > 1:39066426/1‑66 (MQ=255) gCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAgg > 1:23292889/1‑66 (MQ=255) gCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAgg > 1:21580639/1‑66 (MQ=255) gCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAgg > 1:26607745/1‑66 (MQ=255) gCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAgg > 1:10586635/1‑66 (MQ=255) cGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGc < 1:1222027/66‑1 (MQ=255) cGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGc < 1:11954442/66‑1 (MQ=255) cGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGc < 1:8162577/66‑1 (MQ=255) cGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGc < 1:10348338/66‑1 (MQ=255) cGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGc < 1:34005763/66‑1 (MQ=255) cGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCt > 1:22150852/1‑68 (MQ=255) cGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCt > 1:34564123/1‑68 (MQ=255) cGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCt > 1:3187655/1‑68 (MQ=255) cGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCt > 1:9128392/1‑68 (MQ=255) cGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCt > 1:32578764/1‑68 (MQ=255) gTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCt < 1:18487891/67‑1 (MQ=255) gTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCt < 1:6464283/67‑1 (MQ=255) gTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCt < 1:27147704/67‑1 (MQ=255) gTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCt < 1:31676348/67‑1 (MQ=255) gTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCt < 1:18715132/67‑1 (MQ=255) gTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCt < 1:19601463/67‑1 (MQ=255) gcgCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAg > 1:13905537‑M2/4‑68 (MQ=255) gcgCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAg < 1:29839968‑M2/65‑1 (MQ=255) gcgCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAg < 1:861673‑M2/65‑1 (MQ=255) | GCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGT > CP009273/4604336‑4604465 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |