| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4616991 | 250 (0.530) | 7 (0.020) | 3/96 | NT | 3.1% | coding (1263/1383 nt) | radA | DNA repair protein |
| ? | CP009273 | = 4616997 | 221 (0.550) | coding (1269/1383 nt) | radA | DNA repair protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 331 total aligned reads displayed.
AGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGA > CP009273/4616925‑4617058 | gTCGGGCTGGCAGGGGAGATCCGCCCGTTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAac > 1:6771839/1‑67 (MQ=255) cGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAAac < 1:4566618‑M1/66‑3 (MQ=255) gggCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACgg < 1:13622255/68‑1 (MQ=255) gggCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACg < 1:22182352/67‑1 (MQ=255) gCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGt < 1:19622515/67‑1 (MQ=255) gCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGt < 1:12885267/67‑1 (MQ=255) gCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGt < 1:30239302/67‑1 (MQ=255) gCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTt < 1:35306007‑M2/68‑2 (MQ=255) tGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTtt < 1:6865061‑M2/67‑3 (MQ=255) cAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTtttcg < 1:24862147‑M2/67‑6 (MQ=255) aGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTtttcgcc < 1:21384499‑M2/68‑8 (MQ=255) aGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTtttcgcc < 1:2869501‑M2/68‑8 (MQ=255) ggAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTtttcgccgc > 1:12038993‑M2/1‑58 (MQ=255) ggAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCgg < 1:35670932/67‑1 (MQ=255) gagaTCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCggg < 1:10311984/67‑1 (MQ=255) gagaTCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGc > 1:31149093/1‑68 (MQ=255) gagaTCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGc > 1:16226436/1‑68 (MQ=255) gagaTCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGc > 1:28027267/1‑68 (MQ=255) gagaTCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGc > 1:23063563/1‑68 (MQ=255) gaTCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTtttcgccgcttc > 1:24568118‑M2/1‑55 (MQ=255) gaTCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCg < 1:18441642/67‑1 (MQ=255) gaTCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCg < 1:11741507/67‑1 (MQ=255) gaTCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGa > 1:32064908/1‑68 (MQ=255) tCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACCCGGTTTTCGCCGGGCGAtt > 1:16527665/1‑68 (MQ=255) tCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGAtt > 1:31002761/1‑68 (MQ=255) tCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGAtt > 1:29957523/1‑68 (MQ=255) tCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGAtt < 1:34987821/68‑1 (MQ=255) tCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGAtt > 1:25639528/1‑68 (MQ=255) cGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGt < 1:13365015/68‑1 (MQ=255) gCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGtt < 1:11002223/68‑1 (MQ=255) gCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGtt < 1:7335341/68‑1 (MQ=255) ccGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGTGCCATTGTTcc > 1:11893752/1‑68 (MQ=255) ccGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTcc > 1:19357500/1‑68 (MQ=255) ccGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTcc > 1:15490416/1‑68 (MQ=255) ccGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTcc > 1:6204848/1‑68 (MQ=255) ccGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTcc > 1:21811109/1‑68 (MQ=255) ccGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTcc > 1:2367428/1‑68 (MQ=255) ccGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTcc > 1:22391218/1‑68 (MQ=255) ccGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTcc > 1:857233/1‑68 (MQ=255) tGCCCAGCGGCCAGGAACGACTCTCTGAAGCGGCTAAACACGGTtttcgccgcttcagagattcgtt > 1:9883353‑M2/1‑44 (MQ=255) gCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcggcg > 1:14275539/1‑67 (MQ=255) gCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcggcg > 1:38253067/1‑67 (MQ=255) aGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTa > 1:34700139/1‑67 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:707509/1‑68 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:22282066/1‑68 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:25429713/1‑68 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:30823327/1‑68 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:4894203/1‑68 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:26444741/1‑68 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:36177488/1‑68 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:4996739/1‑68 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:29482358/1‑68 (MQ=255) ggTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGt > 1:19922260/1‑68 (MQ=255) ggTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCCCCGGGCGATTGTTCCGGCGGCGAACGt > 1:23782397/1‑68 (MQ=255) cAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGcc > 1:12504960/1‑68 (MQ=255) cAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGc < 1:26045957/67‑1 (MQ=255) cAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGc < 1:14673834/67‑1 (MQ=255) cAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGc < 1:24065463/67‑1 (MQ=255) aaCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaa > 1:38850011/1‑68 (MQ=255) aCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaaa > 1:15441592/1‑68 (MQ=255) aCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaaa > 1:6563979/1‑68 (MQ=255) aCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaaa > 1:956838/1‑68 (MQ=255) aCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaaa > 1:24812793/1‑68 (MQ=255) aCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaaa > 1:9186667/1‑68 (MQ=255) aCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaaa > 1:17600471/1‑68 (MQ=255) aTCTCTGACTCGGCGAAACACGGTTTTCGCCGGGCGATTGCTCCGGCGGCTAACGTGCCGAAAAAAgc < 1:20171418/68‑1 (MQ=255) aTCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAgc > 1:33152971/1‑68 (MQ=255) aTCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAgc > 1:5337957/1‑68 (MQ=255) aTCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAgc > 1:32519829/1‑68 (MQ=255) aTCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAgc > 1:15388703/1‑68 (MQ=255) tctcTGAAGCGGCGAACCACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAgcg < 1:10839466/68‑1 (MQ=255) tctcTGAAGCGGCGAAACACGGCTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAgcg < 1:38211335/68‑1 (MQ=255) tctGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGcc < 1:38654952/68‑1 (MQ=255) tctGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGcc < 1:17789050/68‑1 (MQ=255) gAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGa > 1:19517167/1‑68 (MQ=255) gAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGa > 1:36855123/1‑68 (MQ=255) gAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGa > 1:22524746/1‑68 (MQ=255) aGCGGCGAAAaccgtgtttcgccgcttcagagattcgttcctgaccgctgggcaccgggcggatctc > 1:17281334‑M1/1‑10 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAGGCGCCGGAAg > 1:33423517/1‑68 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGaa < 1:30448579/67‑1 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAg > 1:35234611/1‑68 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAg > 1:14602291/1‑68 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAg > 1:18692523/1‑68 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAg > 1:22668034/1‑68 (MQ=255) gcggcgAAAaccgtgtttcgccgcttcagagattcgttcctgaccgctgggcaccgggcggatctcc > 1:8144695‑M1/1‑9 (MQ=255) gcggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg > 1:19207313/1‑68 (MQ=255) gcggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg > 1:21124762/1‑68 (MQ=255) gcggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg > 1:7434277/1‑68 (MQ=255) gcggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg > 1:5907400/1‑68 (MQ=255) gcggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg > 1:31686220/1‑68 (MQ=255) gcggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg > 1:38881259/1‑68 (MQ=255) ggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAggg < 1:17352359/67‑1 (MQ=255) ggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAggg < 1:15879953/67‑1 (MQ=255) ggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg < 1:16943475/66‑1 (MQ=255) ggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGa > 1:22871794/1‑68 (MQ=255) gAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGc < 1:10020377/68‑1 (MQ=255) aaaccgtgtttcgccgcttcagagattcgttcctgaccgctgggcaccgggcggatctcccctgccag < 1:4841705‑M1/68‑67 (MQ=255) aaaccgtgtttcgccgcttcagagattcgttcctgaccgctgggcaccgggcggatctcccctgcca < 1:8356661‑M1/67‑66 (MQ=255) acacGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGa < 1:3740768/68‑1 (MQ=255) aaccgtgtttcgccgcttcagagattcgttcctgaccgctgggcaccgggcggatctcccctgccag > 1:29049062‑M1/1‑1 (MQ=255) | AGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGA > CP009273/4616925‑4617058 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |