| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4616991 | 250 (0.530) | 7 (0.020) | 3/96 | NT | 3.1% | coding (1263/1383 nt) | radA | DNA repair protein |
| ? | CP009273 | = 4616997 | 221 (0.550) | coding (1269/1383 nt) | radA | DNA repair protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 303 total aligned reads displayed.
GGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGATTTTT > CP009273/4616930‑4617063 | ggCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGt > 1:14316351/1‑68 (MQ=255) gCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTt < 1:32249996‑M2/68‑2 (MQ=255) gCTGGCAGGGGAGATCCGCCCGGGGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGt < 1:18120493/67‑1 (MQ=255) gCTGGCAGGGGAGATCCGCCCGGGGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGt < 1:13284155/67‑1 (MQ=255) cTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTtt < 1:4841705‑M2/68‑3 (MQ=255) cAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTtttcg < 1:24862147‑M2/67‑6 (MQ=255) aGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTtttcgcc < 1:18548717‑M2/68‑8 (MQ=255) aGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTtttcgcc < 1:2869501‑M2/68‑8 (MQ=255) aGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTtttcgcc < 1:26401718‑M2/68‑8 (MQ=255) ggAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTtttcgccgc > 1:12038993‑M2/1‑58 (MQ=255) gagaTCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGc > 1:20667120/1‑68 (MQ=255) gagaTCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGc > 1:31121815/1‑68 (MQ=255) gagaTCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGc > 1:16226436/1‑68 (MQ=255) gagaTCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGc > 1:11788395/1‑68 (MQ=255) agaTCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCg > 1:33650775/1‑68 (MQ=255) gaTCCGCACTGTGCCCAGCGGTCAGGAACGACTCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCg < 1:19303125/67‑1 (MQ=255) tCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACCCGGTTTTCGCCGGGCGAtt > 1:16527665/1‑68 (MQ=255) tCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGAtt > 1:12808662/1‑68 (MQ=255) tCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGAtt > 1:29957523/1‑68 (MQ=255) tCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGAtt > 1:31002761/1‑68 (MQ=255) tCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGAtt < 1:34987821/68‑1 (MQ=255) tCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGAtt > 1:25535910/1‑68 (MQ=255) tCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGAGAtt > 1:27762669/1‑68 (MQ=255) cGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGt < 1:6807183/68‑1 (MQ=255) cGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGt < 1:8152397/68‑1 (MQ=255) cccGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGtt > 1:24004936/1‑67 (MQ=255) ccGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTcc > 1:19609283/1‑68 (MQ=255) ccGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTcc > 1:857233/1‑68 (MQ=255) ccGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTcc > 1:21647980/1‑68 (MQ=255) ggggCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTtttcgccgcttcagagattcgt > 1:38379810‑M2/1‑46 (MQ=255) ggTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTtttcgccgcttcagagattcgt > 1:19371891‑M2/1‑46 (MQ=255) ggTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcg > 1:1555298/1‑67 (MQ=255) ggTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcg > 1:5594670/1‑67 (MQ=255) ggTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcg > 1:6000309/1‑67 (MQ=255) ggTGCCCAGCGGTCAGGAACGAAGCTCTGAAGCGGCGAAACACGGTtttcgccgcttcagagattcgt > 1:21833327‑M2/1‑46 (MQ=255) tGCCCAGCGGTCAGGAACTAATCTCTGAAGCGGCGAAACACGGTtttcgccgcttcagatattcgtt > 1:11328696‑M2/1‑44 (MQ=255) tGCCCAGCGGCCAGGAACGACTCTCTGAAGCGGCTAAACACGGTtttcgccgcttcagagattcgtt > 1:9883353‑M2/1‑44 (MQ=255) gCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcggcgg < 1:737088/68‑1 (MQ=255) gCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcggcg > 1:33382623/1‑67 (MQ=255) gCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcggcg > 1:22265058/1‑67 (MQ=255) gCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcggcg > 1:24248246/1‑67 (MQ=255) cccAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcggcg > 1:14725783/1‑66 (MQ=255) aGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTa > 1:34700139/1‑67 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTacc > 1:4977506/1‑66 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:12266452/1‑68 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:4996739/1‑68 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:30823327/1‑68 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:30414375/1‑68 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:29482358/1‑68 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:7302608/1‑68 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:25961738/1‑68 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:7738028/1‑68 (MQ=255) gCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:9114494/1‑68 (MQ=255) ggTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACg < 1:1463743/67‑1 (MQ=255) ggTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGt > 1:22519362/1‑68 (MQ=255) ggTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGt > 1:9341590/1‑68 (MQ=255) cAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGc < 1:32045648/67‑1 (MQ=255) ggAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGa > 1:19878604/1‑68 (MQ=255) ggAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGa > 1:22526698/1‑68 (MQ=255) aaCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaa > 1:38850011/1‑68 (MQ=255) aCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaaa > 1:6563979/1‑68 (MQ=255) aCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaaa > 1:6219301/1‑68 (MQ=255) aCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaaa > 1:15441592/1‑68 (MQ=255) aCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaa < 1:10769373/67‑1 (MQ=255) aTCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaaaaga > 1:23009774/1‑65 (MQ=255) aTCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAgc > 1:15388703/1‑68 (MQ=255) aTCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAgc < 1:10866218/68‑1 (MQ=255) tctcTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAgcg < 1:37390050/68‑1 (MQ=255) tctcTGAAGCGGCGAAACACGGCTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAgcg < 1:38211335/68‑1 (MQ=255) tctGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGcc < 1:38654952/68‑1 (MQ=255) tctGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGcc < 1:13596526/68‑1 (MQ=255) gAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGa < 1:23759407/68‑1 (MQ=255) gAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGa > 1:36855123/1‑68 (MQ=255) gAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGa > 1:35249536/1‑68 (MQ=255) gAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGa < 1:17572034/68‑1 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGaa < 1:30448579/67‑1 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAg > 1:22668034/1‑68 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAg > 1:32596636/1‑68 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAg > 1:16913083/1‑68 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAg > 1:7050232/1‑68 (MQ=255) aGCGGCGAAACACGGTTTTCGCATGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAg > 1:22341198/1‑68 (MQ=255) gcggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg > 1:2520743/1‑68 (MQ=255) gcggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg > 1:38881259/1‑68 (MQ=255) gcggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg > 1:35766684/1‑68 (MQ=255) gcggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg > 1:35423283/1‑68 (MQ=255) ggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAggg < 1:15879953/67‑1 (MQ=255) ggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAggg < 1:17352359/67‑1 (MQ=255) ggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAggg < 1:18855381/67‑1 (MQ=255) ggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAggg < 1:20960010/67‑1 (MQ=255) ggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg < 1:28865406/66‑1 (MQ=255) ggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGa > 1:22871794/1‑68 (MQ=255) gAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATg < 1:31244792/67‑1 (MQ=255) gAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGc < 1:10020377/68‑1 (MQ=255) acacGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGa < 1:17231617/68‑1 (MQ=255) acacGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGa < 1:23248740/68‑1 (MQ=255) acGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGAtt < 1:36490940/68‑1 (MQ=255) acGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGAtt < 1:17719157/68‑1 (MQ=255) acGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGAtt > 1:24711427/1‑68 (MQ=255) ggTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGAtttt > 1:20113357/1‑68 (MQ=255) gTtttcgccgcttcagagattcgttcctgaccgctgggcaccgggcggatctcccctgccagcccg < 1:4566618‑M2/66‑65 (MQ=255) | GGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGATTTTT > CP009273/4616930‑4617063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |