| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4620353 | 393 (0.830) | 9 (0.020) | 3/94 | NT | 2.6% | intergenic (‑14/‑197) | yjjK/slt | putative transporter subunit of ABC superfamily: ATP‑binding component/lytic murein transglycosylase, soluble |
| ? | CP009273 | = 4620382 | 347 (0.880) | intergenic (‑43/‑168) | yjjK/slt | putative transporter subunit of ABC superfamily: ATP‑binding component/lytic murein transglycosylase, soluble | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 749 total aligned reads displayed.
TTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCAGCC > CP009273/4620287‑4620420 | tCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCctct < 1:34265162/68‑1 (MQ=255) ggcggAAGAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTAt < 1:21407123/68‑1 (MQ=255) ggcggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTAt < 1:20936543/68‑1 (MQ=255) ggcggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTAt < 1:22644088/68‑1 (MQ=255) ggcggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTAt < 1:31029803/68‑1 (MQ=255) gcggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg > 1:9154376/1‑68 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg < 1:9744051/67‑1 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg < 1:19843059/67‑1 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg < 1:38365939/67‑1 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg < 1:7449721/67‑1 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg < 1:24872551/67‑1 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg < 1:16643360/67‑1 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg < 1:33611342/67‑1 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg < 1:25826905/67‑1 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACATCGCCTCTATg < 1:31378762/67‑1 (MQ=255) ggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGtt > 1:26995929/1‑68 (MQ=255) tttGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGa < 1:31855967/68‑1 (MQ=255) cacGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAg < 1:15991228/67‑1 (MQ=255) cacGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAg < 1:8586330/67‑1 (MQ=255) cacGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGt < 1:821634/68‑1 (MQ=255) cacGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGt < 1:5864906/68‑1 (MQ=255) tGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCa > 1:4609791/1‑68 (MQ=255) gCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCTTCTATGTTTATCGTGATAATGAGTTTTCaa > 1:12073581/1‑68 (MQ=255) cATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAa < 1:15451048‑M2/68‑2 (MQ=255) tGGTATAAACGATTTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAagg > 1:14389570‑M2/1‑65 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:123909‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:32340660‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:18587108‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:29041545‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:5576995‑M2/68‑6 (MQ=255) ataAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaa < 1:2971714‑M2/68‑8 (MQ=255) ataAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaa < 1:34364595‑M2/68‑8 (MQ=255) ataAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaa < 1:33035343‑M2/68‑8 (MQ=255) ataAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGAT‑ATGAGTTTTCaa > 1:28490486/1‑60 (MQ=255) taAACTAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaag > 1:27476660‑M2/1‑60 (MQ=255) taAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaag > 1:7814993‑M2/1‑60 (MQ=255) aaaCGAATTGAGCCAGGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaagt > 1:21134348‑M2/1‑59 (MQ=255) aaaCGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaagt > 1:1157763‑M2/1‑59 (MQ=255) aaaCGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaagt > 1:321641‑M2/1‑59 (MQ=255) aaaCGAATTGAGCCACGGTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaagt > 1:25069740‑M2/1‑59 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTTTGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:19349969/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATc > 1:38118089/1‑38 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:33867034/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:35174361/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:37087171/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:34658902/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:29963613/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:1002088/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:30202080/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:373660/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:26186439/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:10460300/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:25175551/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:37984950/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:38786746/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:20707872/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:28236774/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:6723566/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:11150704/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:15411735/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:13554419/1‑68 (MQ=255) aTTGATCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAATGGCGAAGTGTTGc < 1:9505557/67‑1 (MQ=255) ttGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCt > 1:18970061/1‑68 (MQ=255) gCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCtttt > 1:20389099/1‑67 (MQ=255) gCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCtttt > 1:25397071/1‑67 (MQ=255) ccACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCttttt > 1:17432080/1‑67 (MQ=255) cACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCttttt < 1:14116649/66‑1 (MQ=255) tGGCCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGc < 1:28801190/67‑1 (MQ=255) tGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGc < 1:36417055/67‑1 (MQ=255) tGGACTTCGCCTCTATGTTTATCGTGATAATGAGGTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGcc < 1:13920997/68‑1 (MQ=255) aCTTCGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgttt > 1:29450104‑M1/1‑9 (MQ=255) aCTTCGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgttt > 1:20184822‑M1/1‑9 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa > 1:30812248/1‑68 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa > 1:17040668/1‑68 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa > 1:35566673/1‑68 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa > 1:7243543/1‑68 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa > 1:21738030/1‑68 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa > 1:32698120/1‑68 (MQ=255) cTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa < 1:4139521/67‑1 (MQ=255) cTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa < 1:1822361/67‑1 (MQ=255) ttCGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttat < 1:23749373‑M1/68‑62 (MQ=255) ttCGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttat < 1:17790647‑M1/68‑62 (MQ=255) ttCGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttat < 1:8866229‑M1/68‑62 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtcgaacgtggctcaattcgtttatac < 1:24104950‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:22463013‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:13190777‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:27893718‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:29326099‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:6382578‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:34892645‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:30621323‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:14903639‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacacagaggcgaagtccaacgtggctcaattcgtttatac < 1:39072385‑M1/68‑64 (MQ=255) gCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCa > 1:10302490/1‑68 (MQ=255) gCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCa > 1:10669574/1‑68 (MQ=255) cTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatacca < 1:16955090‑M1/67‑66 (MQ=255) cTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatacca < 1:5228513‑M1/67‑66 (MQ=255) tttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttataccatg < 1:35984886‑M1/68‑68 (MQ=255) tttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttataccatg < 1:37706942‑M1/68‑68 (MQ=255) tttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttataccat > 1:23255098‑M1/1‑1 (MQ=255) | TTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCAGCC > CP009273/4620287‑4620420 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |