| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 223526 | 63 (0.130) | 6 (0.010) | 4/100 | NT | 17.6% | noncoding (1281/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 223533 | 0 (0.000) | noncoding (1288/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
Only 100 of 257 total aligned reads displayed.
AGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGA > CP009273/223459‑223592 | aGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGG > 1:11297134‑M1/1‑68 (MQ=255)aGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGG < 1:25248199‑M1/68‑1 (MQ=255)aGGTGTACTGTGAGGTATGCTGGAGGTAGCAGAAGTGCGAATTCTGACATAAGTAACGATAAAGCGGG < 1:34158530‑M1/68‑1 (MQ=255) ggTGTACTGTGAGGTATGCTTGAGGTATCAGAAGTGCGAATACTGACATAAGTAACGATAAAGCGGGt > 1:39010442/1‑68 (MQ=14) ggTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGt > 1:10697779/1‑68 (MQ=40) ggTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGt > 1:3528915/1‑68 (MQ=40) ggTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGt > 1:8413877/1‑68 (MQ=40) tgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTg < 1:34843771/67‑1 (MQ=40) tgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTg < 1:18169665/67‑1 (MQ=40) tgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGa > 1:2270539/1‑68 (MQ=40) tgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGa > 1:3589234/1‑68 (MQ=40) tgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGa > 1:21241151/1‑68 (MQ=40) gtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaa > 1:13741729/1‑68 (MQ=40) tACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaa > 1:17957806/1‑68 (MQ=39) tACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaa > 1:38052826/1‑68 (MQ=39) tACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaa > 1:24695708/1‑68 (MQ=39) tACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaa > 1:8893883/1‑68 (MQ=39) acagtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa > 1:38308377/4‑68 (MQ=25) aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa > 1:26497353/1‑68 (MQ=37) aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa > 1:31985736/1‑68 (MQ=37) aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa > 1:32695850/1‑68 (MQ=37) aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa > 1:14729113/1‑68 (MQ=37) aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa > 1:4540875/1‑68 (MQ=37) aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa > 1:974707/1‑68 (MQ=37) aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa > 1:11853279/1‑68 (MQ=37) aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa > 1:5325944/1‑68 (MQ=37) aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa > 1:15992032/1‑68 (MQ=37) aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa > 1:1361939/1‑68 (MQ=37) aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa > 1:4059062/1‑68 (MQ=37) aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa > 1:1447330/1‑68 (MQ=37) aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGAAAAAGCGGGTGaaaa > 1:26945814/1‑68 (MQ=255) tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 1:29508902/1‑67 (MQ=35) tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 1:26413093/1‑67 (MQ=35) tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 1:5599140/1‑67 (MQ=35) tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 1:24109426/1‑67 (MQ=35) tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 1:36227858/1‑67 (MQ=35) tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 1:23431322/1‑67 (MQ=35) tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 1:22869829/1‑67 (MQ=35) tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 1:10462181/1‑67 (MQ=35) tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 1:13062114/1‑67 (MQ=35) tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 1:14640203/1‑67 (MQ=35) tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 1:10079964/1‑67 (MQ=35) tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 1:13843077/1‑67 (MQ=35) tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 1:14114327/1‑67 (MQ=35) tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACAAAAGTAACGATAAAGCGGGTGAAAAg > 1:37150460/1‑67 (MQ=25) gtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGc < 1:16346958‑M2/67‑2 (MQ=255) gtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGc < 1:17017367‑M2/67‑2 (MQ=255) gtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGc < 1:37452946‑M2/67‑2 (MQ=255) gtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGc < 1:14414763‑M2/67‑2 (MQ=255) gAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGccc < 1:25410710‑M2/67‑4 (MQ=255) gAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGccc < 1:5353065‑M2/67‑4 (MQ=255) gAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGccc < 1:17515415‑M2/67‑4 (MQ=255) gAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGccc < 1:6692000‑M2/67‑4 (MQ=255) gAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGccc < 1:24740262‑M2/67‑4 (MQ=255) gAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGccc < 1:15220397‑M2/67‑4 (MQ=255) gAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGccc < 1:14883041‑M2/67‑4 (MQ=255) gAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCCGGTGAAAAGccc < 1:27616667‑M2/67‑4 (MQ=255) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgc < 1:3093695‑M2/67‑6 (MQ=255) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgc < 1:21907335‑M2/67‑6 (MQ=255) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgc < 1:20001805‑M2/67‑6 (MQ=255) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgc < 1:24330526‑M2/67‑6 (MQ=255) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgc < 1:16478701‑M2/67‑6 (MQ=255) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgc < 1:7326579‑M2/67‑6 (MQ=255) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgc < 1:32244255‑M2/67‑6 (MQ=255) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgc < 1:19341577‑M2/67‑6 (MQ=255) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgc < 1:30629145‑M2/67‑6 (MQ=255) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgc < 1:25533763‑M2/67‑6 (MQ=255) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgc < 1:3753798‑M2/67‑6 (MQ=255) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgc < 1:6301687‑M2/67‑6 (MQ=255) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgc < 1:27115655‑M2/67‑6 (MQ=255) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgc < 1:6126243‑M2/67‑6 (MQ=255) gTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAACGCGGGTGAAAAGCCCGCTc > 1:25636551/1‑68 (MQ=18) gTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc > 1:8002413/1‑68 (MQ=33) tATGATGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgct > 1:17351392‑M2/1‑60 (MQ=255) gTAACGATAAAGCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc > 1:21318435‑M1/1‑16 (MQ=255) aaCGATAAAGCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctcc > 1:13004888‑M1/1‑14 (MQ=255) aaCGATAAAGCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctcc > 1:28774213‑M1/1‑14 (MQ=255) gctggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacc < 1:3011128‑M1/64‑63 (MQ=255) gCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacc < 1:24553263‑M1/67‑63 (MQ=255) gCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacc < 1:35040431‑M1/67‑63 (MQ=255) gCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacc < 1:8812057‑M1/67‑63 (MQ=255) gCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacc < 1:2496018‑M1/67‑63 (MQ=255) gCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacc < 1:26907282‑M1/67‑63 (MQ=255) gCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacc < 1:2721720‑M1/67‑63 (MQ=255) gCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacc < 1:13283945‑M1/67‑63 (MQ=255) gCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacc < 1:29288748‑M1/67‑63 (MQ=255) gCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacc < 1:17302239‑M1/67‑63 (MQ=255) gCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacc < 1:30099659‑M1/67‑63 (MQ=255) gCGGGccattcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacc < 1:7170627‑M1/67‑63 (MQ=255) gggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacctc < 1:13616361‑M1/67‑65 (MQ=255) gggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacctc < 1:13970814‑M1/67‑65 (MQ=255) gggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacctc < 1:32455893‑M1/67‑65 (MQ=255) gggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacctc < 1:8597760‑M1/67‑65 (MQ=255) gggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacctc < 1:34591911‑M1/67‑65 (MQ=255) gggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacctc < 1:12000800‑M1/67‑65 (MQ=255) gggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacctc < 1:14689987‑M1/67‑65 (MQ=255) gcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacctcac < 1:2850385‑M1/67‑67 (MQ=255) gcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacctcac < 1:18805941‑M1/67‑67 (MQ=255) gcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacctcac < 1:30499005‑M1/67‑67 (MQ=255) gcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacctcac < 1:19922316‑M1/67‑67 (MQ=255) | AGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGA > CP009273/223459‑223592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |