| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 248296 = | 200 (0.420) | 28 (0.070) | 13/96 | NT | 12.2% | coding (912/1056 nt) | dinB | DNA polymerase IV |
| ? | CP009273 | 248360 = | 231 (0.570) | coding (976/1056 nt) | dinB | DNA polymerase IV | |||||
Only 100 of 383 total aligned reads displayed.
TGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGC > CP009273/248229‑248363 | tGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGG < 1:31453793‑M1/68‑1 (MQ=255)tGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGG < 1:5028289‑M1/68‑1 (MQ=255) agttgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccgcc < 1:24121340‑M1/3‑1 (MQ=255) tgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCcgcg < 1:22076783‑M1/6‑1 (MQ=255) tgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCcgcg < 1:19253971‑M1/6‑1 (MQ=255) gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCG < 1:13501364‑M1/68‑1 (MQ=255) cTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCG > 1:36316220‑M1/1‑67 (MQ=255) tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc < 1:34944479‑M1/8‑1 (MQ=255) tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc < 1:34210449‑M1/8‑1 (MQ=255) tCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGC < 1:10201530‑M1/68‑1 (MQ=255) tCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGC < 1:2908352‑M1/68‑1 (MQ=255) gCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGC‑AACCACCCAGGAGCACGTCTGGCCGCGGCTGa < 1:28038543/68‑1 (MQ=255) ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAACCCACCCAGGAGCACGTCTGGCCGCGGCTGa > 1:34076135/1‑68 (MQ=255) ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa > 1:24612689/1‑68 (MQ=255) ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa > 1:26564120/1‑68 (MQ=255) ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa > 1:35893994/1‑68 (MQ=255) ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa > 1:16269630/1‑68 (MQ=255) cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa < 1:11466121/67‑1 (MQ=255) cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa < 1:1005740/67‑1 (MQ=255) cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa < 1:28468124/67‑1 (MQ=255) cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa < 1:6339527/67‑1 (MQ=255) cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa < 1:16799764/67‑1 (MQ=255) cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa < 1:35508762/67‑1 (MQ=255) cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa < 1:8319843/67‑1 (MQ=255) cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa < 1:8774004/67‑1 (MQ=255) gggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa > 1:16519054/1‑68 (MQ=255) gggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa > 1:11941737/1‑68 (MQ=255) ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa < 1:24476177/67‑1 (MQ=255) ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa < 1:12547823/67‑1 (MQ=255) ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa < 1:33754139/67‑1 (MQ=255) ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCCGGCCGCGGCTGAATaaa < 1:38236390/67‑1 (MQ=255) gTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa > 1:36524691/1‑66 (MQ=255) aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa < 1:1274225/67‑1 (MQ=255) aTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa > 1:17460510/1‑66 (MQ=255) ttAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTCATCt < 1:8482925/68‑1 (MQ=255) tAAAGTTCGACGA‑TTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa < 1:4813734/68‑1 (MQ=255) aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa < 1:14353272/68‑1 (MQ=255) aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa < 1:18145148/68‑1 (MQ=255) aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa < 1:2467273/68‑1 (MQ=255) aGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc > 1:23799811/1‑68 (MQ=255) aGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc < 1:35664964/68‑1 (MQ=255) gTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc > 1:14155765/1‑67 (MQ=255) ttCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCg > 1:25015728/1‑67 (MQ=255) ttCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCg > 1:160369/1‑67 (MQ=255) ttCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCg > 1:21039005/1‑67 (MQ=255) tCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTGATCGc < 1:23469606/67‑1 (MQ=255) ttttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgc < 1:9333322/68‑1 (MQ=255) ttttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgc < 1:6879883/68‑1 (MQ=255) tttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgcg < 1:37694075/68‑1 (MQ=255) tttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgcg < 1:19837633/68‑1 (MQ=255) tgcagccccaccagacgcacaccgcgcccGCCGCGGCGGAATAAAGCTGATCTAATCGCCACcgcgcg < 1:30527839‑M1/39‑1 (MQ=255) gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa > 1:25792638/1‑67 (MQ=255) ccccaccagacgcacaccgcgcccGCCGCGGGGGAATAAAGCGGGTCGAATCGCCACCGCGCGGaaa < 1:6154719‑M1/43‑1 (MQ=255) cccaccagacgcacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCCCCGCGCgtaacc < 1:17040673‑M1/44‑3 (MQ=255) aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa < 1:10806899/66‑1 (MQ=255) aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAAc < 1:28159237/67‑1 (MQ=255) aaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCt < 1:18948431/68‑1 (MQ=255) accCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGa < 1:5696762/68‑1 (MQ=255) ccAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATg > 1:32604168/1‑68 (MQ=255) ccAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATg > 1:31627417/1‑68 (MQ=255) acgcacaccgcgcccGCCGCGGCTGAATAACGCGGATCTAATCGCCACCGCGCGGAAAACCGGGGATg < 1:10976528‑M1/53‑1 (MQ=255) cgcacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGGAAAACCGGGGCTGa < 1:38863505‑M1/54‑1 (MQ=255) gcacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTGATCGCCACCGCGCGTAAAACCGGGGATGa < 1:21832132‑M1/54‑1 (MQ=255) ggAGCACGTCTGGCCGGGGCggtcatcccaggttttacgcgcggtggcgattagatcagctttattcc > 1:30984399‑M1/1‑20 (MQ=255) ggAGCACGTCTGGCCGCGGCggtcatcccaggttttacgcgcggtggcgatgtgatcagcgttattca > 1:4342599‑M1/1‑20 (MQ=255) agtaCGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg > 1:14541092/4‑67 (MQ=255) aGCACGTCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcag > 1:31870934‑M1/1‑18 (MQ=255) aGCACGTCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcag > 1:22748574‑M1/1‑18 (MQ=255) aGCACGTCTGGCCGCGGCgttcagcccaggttttacgcgcggtggcgattagatgagctttattcag > 1:32349231‑M1/1‑18 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCGCCGCGCGTAAAACCTGGGATGAACg < 1:27629157‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc < 1:33126876/66‑1 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:9588459‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:9247115‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:12191873‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:15565901‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:25919587‑M2/67‑2 (MQ=255) gCACGTCTGGCCGCGGCgttcatccccggttttacgcgcggtggcgatttgatcagctttattccgcc > 1:17897364‑M1/1‑17 (MQ=255) gCACGTCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagcc > 1:22152163‑M1/1‑17 (MQ=255) gCACGTCTGGCCGCGGCTGAATAAAGCTTATCAAATCGCCACCGCGCGTAACACCTTGGATGAACgcc < 1:20122548‑M2/68‑4 (MQ=255) gCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgcc < 1:32108241‑M2/68‑4 (MQ=255) gCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgcc < 1:33461467‑M2/68‑4 (MQ=255) accgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGGGTAAAACCTTGGATGCAcgcc < 1:18325414‑M1/59‑1 (MQ=255) accgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcgcc < 1:13722935‑M1/59‑1 (MQ=255) accgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcgcc < 1:27252746‑M1/59‑1 (MQ=255) aCGTCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgc > 1:15035549‑M1/1‑15 (MQ=255) gTCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcg > 1:15366581‑M1/1‑13 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcgg > 1:19680542‑M2/1‑61 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcgg > 1:17661632‑M2/1‑61 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcg < 1:38475356‑M2/67‑7 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcg < 1:8085108‑M2/67‑7 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGAGGAACgccgcgg > 1:29373244‑M2/1‑61 (MQ=255) tCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcgg > 1:7483547‑M1/1‑12 (MQ=255) cccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCgcggcg < 1:6727987‑M1/65‑1 (MQ=255) cccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGGAAAACCTGGGATGAACGCCgcggcg < 1:33310923‑M1/65‑1 (MQ=255) cccGCCGCGGCAGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCAGGGATGCACGCCgcggcg < 1:4227852‑M1/65‑1 (MQ=255) cTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggcc > 1:24190253‑M2/1‑59 (MQ=255) ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg < 1:2701294/68‑1 (MQ=255) gCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggccaga < 1:7722824‑M1/68‑61 (MQ=255) GCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggc < 1:13112878‑M1/68‑1 (MQ=255) GCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggc < 1:13064759‑M1/68‑1 (MQ=255) | TGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGC > CP009273/248229‑248363 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |