| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360070 = | 452 (0.960) | 760 (2.150) +CTGATCAGTGAATT |
28/84 | NT | 69.8% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 425 (0.900) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
Only 100 of 1389 total aligned reads displayed.
CCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCC > CP009273/360003‑360136 | ccAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgat < 1:16366007/68‑1 (MQ=255)ccAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgat < 1:34794979/68‑1 (MQ=255)ccAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgat > 1:35241241/1‑68 (MQ=255) gagGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgatgat > 1:38688983/1‑68 (MQ=255) agGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATa > 1:27716552/1‑68 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:37932908/1‑68 (MQ=255) gCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:32741147/1‑67 (MQ=255) gCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCAGCCAGTGCAGGAGCTCCGATGATaa > 1:23081290/1‑67 (MQ=255) aCTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:21987061/1‑65 (MQ=255) aCTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGc < 1:1429780/67‑1 (MQ=255) aCTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCt < 1:28263978/68‑1 (MQ=255) gcctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa > 1:24760787‑M1/55‑68 (MQ=255) aCCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCaa < 1:22813633/68‑1 (MQ=255) aCCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCaa > 1:11050923/1‑68 (MQ=255) cctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa < 1:36116679‑M1/14‑1 (MQ=255) cctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa < 1:14875767‑M1/14‑1 (MQ=255) cctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa < 1:15352077‑M1/14‑1 (MQ=255) ctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAAc > 1:6922771‑M1/53‑68 (MQ=255) tacccggatattatcgtgcggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACa > 1:15914226‑M1/52‑68 (MQ=255) tacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACa > 1:22348569‑M1/52‑68 (MQ=255) tacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACa > 1:15097549‑M1/52‑68 (MQ=255) tacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACa > 1:9285990‑M1/52‑68 (MQ=255) gCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACa > 1:33746251/1‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCt > 1:19240523‑M1/50‑58 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:34264557‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:18698069‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:18190679‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:3188223‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg < 1:17201977‑M1/19‑1 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:36584313‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:3746588‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:11648941‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg < 1:10314741‑M1/19‑1 (MQ=255) cccggatattatcgtgaggatgcgacatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:20289382‑M1/50‑68 (MQ=255) ccggatattatcgtgaggatgcggcatggccattaattccctgatcagTGATAAGCTGTCAAGCATga < 1:13039201‑M1/20‑1 (MQ=255) cggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATgag > 1:26999688‑M1/48‑68 (MQ=255) ggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATgaga > 1:1228373‑M1/47‑68 (MQ=255) ggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATgaga > 1:31012580‑M1/47‑68 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGaa > 1:32129777‑M1/45‑67 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:32369531‑M1/24‑1 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:38423239‑M1/24‑1 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:33003018‑M1/24‑1 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:4045895‑M1/24‑1 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:286881‑M1/24‑1 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:11938012‑M1/24‑1 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:7417252‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:1140472‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:31396629‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:30555418‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:7893241‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:8956257‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:23856283‑M1/24‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:6488985‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:15572083‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:13991263‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:30140435‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:35430958‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:17922571‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATTc > 1:1069898‑M1/43‑68 (MQ=255) ggCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC < 1:16861805‑M1/68‑1 (MQ=255) atcgtgaggatgcgtcatcgccattaattcacttatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:21741225‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:29838081‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:14554470‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:17454916‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:37167070‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:29373246‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:18470281‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:8315773‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:19896527‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:21043058‑M1/28‑2 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:5897948‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:28846643‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:6199178‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:25500780‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:24457186‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:23371775‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:20613652‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:12637217‑M1/29‑3 (MQ=255) tcctgaggatgcgtcatcgccattaattaactgatcatTGATAAGATTTCAAACATGAGAAttccat < 1:9589072‑M1/29‑3 (MQ=255) aCCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATcc < 1:38930001/68‑1 (MQ=255) aCCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATcc < 1:5630800/68‑1 (MQ=255) aCCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATcc < 1:463623/68‑1 (MQ=255) aCCATCCAGCGCCACCATACAGTGCAGGAGCTCCGATGATAAGCTTTCAAACATGAGAATCCCGATcc < 1:26136032/68‑1 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:2081584/1‑68 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:34514596/1‑68 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:5207242/1‑68 (MQ=255) ccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAg < 1:19476516/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:13602530/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:35768623/68‑1 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg < 1:24249203/68‑1 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:13377676/1‑68 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgtgc > 1:27329889/1‑68 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:10037430/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:8598496/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:25152315/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcggg < 1:2643899/65‑1 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt > 1:33266046/1‑65 (MQ=255) cagtgataagCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa < 1:31549094‑M1/65‑39 (MQ=255) cGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGc < 1:2574018/68‑1 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:4370100‑M1/2‑28 (MQ=255) | CCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCC > CP009273/360003‑360136 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |