| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360070 = | 452 (0.960) | 760 (2.150) +CTGATCAGTGAATT |
28/84 | NT | 69.8% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 425 (0.900) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
Only 100 of 1223 total aligned reads displayed.
GCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCAT > CP009273/561498‑561631 | gccgcAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCAtt > 1:18967232/1‑67 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAAt < 1:4420528/65‑1 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATa < 1:36065744/66‑1 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACa > 1:27433916/1‑68 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACa > 1:29967859/1‑68 (MQ=255) gCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACaaaa < 1:4730307/68‑1 (MQ=255) cGTGTTTTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAAc < 1:20355377/67‑1 (MQ=255) tgttgtGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCaa > 1:12417236/1‑68 (MQ=255) tgtgAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAAtt > 1:31625058/1‑67 (MQ=255) gAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAg < 1:3075680/68‑1 (MQ=255) gcctaccCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa < 1:34309423‑M2/65‑29 (MQ=255) gcctaccCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa > 1:30202160‑M2/4‑40 (MQ=255) gcctaccCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa > 1:21905301‑M2/4‑40 (MQ=255) gcctaccCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa < 1:10631215‑M2/65‑29 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:14162999/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:22266454/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:15338084/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:792101/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:24964925/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:12168618/1‑68 (MQ=255) cctacCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa < 1:11557786‑M2/65‑29 (MQ=255) ctaCCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaa > 1:28799143‑M2/2‑38 (MQ=255) ctaCCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaa > 1:18262114‑M2/2‑38 (MQ=255) tACCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaaca > 1:35243967‑M2/1‑37 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:32215322‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg < 1:33090070‑M2/68‑34 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg < 1:20960440‑M2/68‑34 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:6450386‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:11096035‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:8293629‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:35525481‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg < 1:17201977‑M2/68‑34 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:16802884‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:3184799‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:36397448‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:18672690‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:28493254‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:14524626‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTg > 1:12857323/1‑67 (MQ=255) ccGGATATTATCGTGAGGATACGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:36799221‑M2/68‑35 (MQ=255) gATATTATCGTGAGGATGCGTCATCGCCATTaattcactga > 1:21173528‑M2/1‑31 (MQ=255) gATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTc > 1:17560080/1‑68 (MQ=255) gATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTc > 1:10902629/1‑68 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:4116439‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:9128190‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:38423239‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:32539499‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:2299347‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaa > 1:37471201‑M2/1‑30 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgacaat < 1:860693‑M2/68‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:2543570‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:24317382‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:1501953‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:29501817‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:3723790‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCg > 1:21565502/1‑67 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTgattcactgatcagtgataagctgtcaaacatgagaatt < 1:31320425‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaatt < 1:38099210‑M2/67‑40 (MQ=255) ttatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcc > 1:33397742‑M2/1‑27 (MQ=255) ttatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcc > 1:6228300‑M2/1‑27 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat > 1:39061615‑M2/1‑25 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:55581‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:34838778‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:34510137‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:26120096‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:23357864‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:20647487‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:19595814‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:18470281‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:7306521‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:13089407‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:10251010‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattaactgatcagtgataagctgtcaaacatgagaattcca < 1:38699477‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAt > 1:27813217/1‑68 (MQ=255) atCGTGAGGATGCGTCATCGCCAATGCTCCCCAAAGACAAAACCAATTTCAGCCAGTGCCTCGTCCAt > 1:16128266/1‑68 (MQ=255) atCGTGAGGATGCGTCATCCCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:32811667‑M2/67‑43 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:9446917‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:5897948‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:7527581‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:33616394‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:14771466‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:25919834‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:24463438‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:18013156‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:19318724‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAtt > 1:15612080/1‑68 (MQ=255) tCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAtt > 1:2389468/1‑68 (MQ=255) cGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttt > 1:10022236/1‑68 (MQ=255) cGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttt > 1:1340287/1‑68 (MQ=255) cGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttt > 1:22575078/1‑68 (MQ=255) cGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttt > 1:5115251/1‑68 (MQ=255) cGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttt > 1:26438784/1‑68 (MQ=255) tGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCGGCCAGTGCCTCGTCCAttttt > 1:6739193/1‑68 (MQ=255) aGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTc > 1:1992886/1‑68 (MQ=255) aGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTc > 1:2693508/1‑68 (MQ=255) ggATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCg > 1:11790851/1‑68 (MQ=255) gTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGa > 1:16550907/1‑66 (MQ=255) tCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAAc > 1:29103306/1‑67 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:13791188/67‑1 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:33906753/67‑1 (MQ=255) | GCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCAT > CP009273/561498‑561631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |