| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 391213 = | 344 (0.730) | 22 (0.060) | 7/94 | NT | 5.4% | coding (531/1158 nt) | ampH | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase |
| ? | CP009273 | 391301 = | 479 (1.210) | coding (443/1158 nt) | ampH | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase | |||||
Only 100 of 578 total aligned reads displayed.
CGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACA > CP009273/391146‑391280 | atgggacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggt < 1:11794173‑M1/1‑1 (MQ=255)atgggacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggt < 1:36756676‑M1/1‑1 (MQ=255)atgggacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggt < 1:12718457‑M1/1‑1 (MQ=255)atgggacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggt < 1:24872626‑M1/1‑1 (MQ=255)atgggacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggt < 1:25844406‑M1/1‑1 (MQ=255)atgggacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggt < 1:26403199‑M1/1‑1 (MQ=255) tgggacgcccattacgctggtcaatctggcaacccatacccgcgccctgccccgtgtacagccccgTg < 1:26822893‑M1/2‑1 (MQ=255) tgggacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTg < 1:9682730‑M1/2‑1 (MQ=255) tgggacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTg < 1:400292‑M1/2‑1 (MQ=255) tgggacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTg < 1:24035639‑M1/2‑1 (MQ=255) tgggacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTg < 1:31493730‑M1/2‑1 (MQ=255) tgggacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTg < 1:27503185‑M1/2‑1 (MQ=255) gggacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTg < 1:22731639‑M1/2‑1 (MQ=255) gggacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTg < 1:30763106‑M1/2‑1 (MQ=255) gacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTGgc < 1:21026324‑M1/4‑1 (MQ=255) gacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTGgc > 1:10229324‑M1/64‑67 (MQ=255) gacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTGgc > 1:32175525‑M1/64‑67 (MQ=255) gacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTGgc < 1:33548039‑M1/4‑1 (MQ=255) gacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTGgc < 1:13308659‑M1/4‑1 (MQ=255) gacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTGgc < 1:13074521‑M1/4‑1 (MQ=255) gacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTGgc < 1:12559903‑M1/4‑1 (MQ=255) gacgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTGgc < 1:852344‑M1/4‑1 (MQ=255) cgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTGgcgc > 1:27770105‑M1/62‑67 (MQ=255) cgcccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTGgcgc > 1:11181752‑M1/62‑67 (MQ=255) ttCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGc < 1:28087878/68‑1 (MQ=255) ccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTGGCGCGGc < 1:14860329‑M1/9‑1 (MQ=255) ccattacgctggtcaatctggcaacccataccagcgccctgccccgtgaacagcccggTGGCGCGGc > 1:32314963‑M1/59‑67 (MQ=255) ccAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGcaca > 1:18380561/1‑64 (MQ=255) ccAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTc > 1:6021895/1‑68 (MQ=255) ccAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTc > 1:20560720/1‑68 (MQ=255) ccAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTc > 1:13805810/1‑68 (MQ=255) tGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTATCAGCt > 1:15840152/1‑68 (MQ=255) gCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCCGCt > 1:23650838/1‑67 (MQ=255) aTCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTc < 1:33154659/67‑1 (MQ=255) tCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGc < 1:17337392/68‑1 (MQ=255) tcaatctggcaacccataccagcgccctgccccgtgaacagcccggTGGCGCGGCTTTCAGCTTCGcc < 1:14529811‑M1/22‑1 (MQ=255) cTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGcc < 1:37342386/68‑1 (MQ=255) cTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGcc < 1:22079085/68‑1 (MQ=255) cTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGcc < 1:30507359/68‑1 (MQ=255) tGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCg > 1:5122697/1‑68 (MQ=255) tGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCg > 1:9305940/1‑68 (MQ=255) ccAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTa > 1:3456351/1‑68 (MQ=255) cagcagGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTa < 1:23142839/67‑1 (MQ=255) gcagGTCGAACGCAAGG‑TAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGaaa > 1:19242665/1‑68 (MQ=255) ggTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAgg > 1:5265351/1‑68 (MQ=255) tCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAgg < 1:4602947/66‑1 (MQ=255) tCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAg < 1:29709486/65‑1 (MQ=255) cGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTa < 1:36165491/67‑1 (MQ=255) cGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTa < 1:38198365/67‑1 (MQ=255) cGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTAt < 1:10966663/68‑1 (MQ=255) aCGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTAttt < 1:2910792/67‑1 (MQ=255) aCGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTAttt < 1:36452754/67‑1 (MQ=255) aCGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTAttt < 1:11537993/67‑1 (MQ=255) ggTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGt > 1:18638497/1‑68 (MQ=255) gTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGtt > 1:28688929/1‑68 (MQ=255) ttAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGtt < 1:15501617/67‑1 (MQ=255) tAGAGAACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGc < 1:21813562/68‑1 (MQ=255) cctgccccgtgaacagcccggTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGc < 1:16909860‑M1/46‑1 (MQ=255) agTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTc > 1:25607738/1‑67 (MQ=255) agTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTc > 1:17869654/1‑67 (MQ=255) agTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTc > 1:7650005/1‑67 (MQ=255) agTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTc > 1:35069241/1‑67 (MQ=255) agTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTc > 1:29367180/1‑67 (MQ=255) agTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTc > 1:16751947/1‑67 (MQ=255) agTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTc > 1:26070338/1‑67 (MQ=255) agTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTc > 1:31285949/1‑67 (MQ=255) gTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTcgc > 1:5947905/1‑68 (MQ=255) gTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTcgc > 1:19718453/1‑68 (MQ=255) gTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTcgc > 1:6981217/1‑68 (MQ=255) tACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTcgc > 1:27199020/1‑67 (MQ=255) tACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTcgc > 1:31895428/1‑67 (MQ=255) tACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTcgc > 1:20092827/1‑67 (MQ=255) tACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTcgc > 1:14035943/1‑67 (MQ=255) aCGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTcgcgc < 1:37591139/68‑1 (MQ=255) aCGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTcgcg < 1:22362849/67‑1 (MQ=255) aCGCCCCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGATGCTcgcgc < 1:34069559/68‑1 (MQ=255) gccgccTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGGAGAAAGGTATTTCCAGCGTTGCTCGCGCGt > 1:5550566/1‑68 (MQ=255) ccgccTGACTGCCTGGCGCGGCTTTCAGCTTCTCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGtt > 1:7091593/1‑68 (MQ=255) cgccTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGt < 1:9030586/36‑1 (MQ=255) gccTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTgg < 1:6307267/68‑1 (MQ=255) gccTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTgg < 1:18942108/68‑1 (MQ=255) acagcccggTGGCGCGGGTTTCAGCTTCGCCGGAGTAAGGTTTTTCCAGCGTTGCTCGCGCGTTGgcg < 1:14295343‑M1/59‑2 (MQ=255) aCTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAg > 1:12052788/1‑67 (MQ=255) aCTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAg > 1:35781194/1‑67 (MQ=255) aCTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAg > 1:8044448/1‑67 (MQ=255) cccggTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGAc < 1:8799806‑M1/63‑1 (MQ=255) cTGCCTGGCGCTGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGa < 1:32604894/67‑1 (MQ=255) cTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGa < 1:38657559/67‑1 (MQ=255) cTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGa < 1:24480345/67‑1 (MQ=255) cTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGa < 1:30152260/67‑1 (MQ=255) cTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGa < 1:6812794/67‑1 (MQ=255) tGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACa > 1:779524/1‑68 (MQ=255) tGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACa > 1:21572847/1‑68 (MQ=255) ccggTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACa < 1:21235‑M1/64‑1 (MQ=255) cTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAac < 1:16267345/68‑1 (MQ=255) cTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAac < 1:31747748/68‑1 (MQ=255) cTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAac < 1:35351964/68‑1 (MQ=255) cTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAac < 1:2022744/68‑1 (MQ=255) TGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAaca > 1:22567368‑M1/1‑68 (MQ=255) TGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAac < 1:38916965‑M1/67‑1 (MQ=255) | CGGACGCATTCGCCAGTGCATCTGCCAGCAGGTCGAACGCAAGGTTAGAGTACGCCGCCTGACTGCCTGGCGCGGCTTTCAGCTTCGCCGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACA > CP009273/391146‑391280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |