New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 391213 =344 (0.730)22 (0.060) 7/94 NT 5.4% coding (531/1158 nt) ampH D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase
?CP009273 391301 = 479 (1.210)coding (443/1158 nt) ampH D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase

Only 100 of 702 total aligned reads displayed.

CGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCATT  >  CP009273/391234‑391368
                                                                   |                                                                   
gtttgtctggccaacgcgcgagcaacgctggaaatacctttctacggcgaagctgaaagccgcgccac                                                                     <  1:26373921‑M2/1‑1 (MQ=255)
    gtctggccaacgcgcgagcaacgctggaaatacctttctacggcgaagctgaaagccgcgccaCCggg                                                                 <  1:8959339‑M2/5‑1 (MQ=255)
      aaGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCggg                                                                 <  1:20022983/66‑1 (MQ=255)
      aaGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGc                                                                <  1:29052388/67‑1 (MQ=255)
      aaGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGc                                                                <  1:28654783/67‑1 (MQ=255)
        ggccaacgcgcgagcaacgctggaaatacctttctacggcgaagctgaaagccgcgccaCCGGGCTGt                                                             <  1:39031975‑M2/9‑1 (MQ=255)
        ggccaacgcgcgagcaacgctggaaatacctttcaacggcgaagctgaacgccgcgccaCCGGGCTGt                                                             <  1:15499788‑M2/9‑1 (MQ=255)
        ggTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGt                                                             >  1:3884415/1‑68 (MQ=255)
        ggTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGt                                                             >  1:4528500/1‑68 (MQ=255)
        ggTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGt                                                             >  1:33380952/1‑68 (MQ=255)
         gTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGt                                                             >  1:32603213/1‑67 (MQ=255)
          tataTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGt                                                             <  1:37261065/66‑1 (MQ=255)
          tATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGt                                                             <  1:30355625/66‑1 (MQ=255)
           aTTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTc                                                           <  1:29545649/67‑1 (MQ=255)
           aTTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTc                                                           <  1:2251369/67‑1 (MQ=255)
               ccAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACggg                                                      <  1:24867488/68‑1 (MQ=255)
               ccAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACggg                                                      <  1:5458623/68‑1 (MQ=255)
               ccAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACggg                                                      <  1:17684138/68‑1 (MQ=255)
                cAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACggg                                                      >  1:18385114/1‑67 (MQ=255)
                    gTTGCTCGCGCGTTGGCCAGACAAACACCGGACGTTGTGCCGCGCCACCGGGCTGTTCACGGGGCAgg                                                 >  1:16038937/1‑68 (MQ=255)
                    gTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCCCCGGGCTGTTCACGGGGCAgg                                                 >  1:33769401/1‑68 (MQ=255)
                    gTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGc                                                    <  1:13544419/65‑1 (MQ=255)
                    gTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAgg                                                 >  1:34468809/1‑68 (MQ=255)
                    gTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAgg                                                 >  1:35333560/1‑68 (MQ=255)
                    gTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAgg                                                 <  1:35561164/68‑1 (MQ=255)
                    gTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAgg                                                 <  1:11341485/68‑1 (MQ=255)
                     gcaacgctggaaatacctttctacggcgaagctgaaagccgcgccaCCGGGCTGTTCACGGGGCAgg                                                 <  1:6692356‑M2/21‑1 (MQ=255)
                      tGCTCGCGCGTTGGCCTGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGgc                                               <  1:10135954/68‑1 (MQ=255)
                      tGCTCGCGCGTTGGCCAGACAAACACCGGACGCTGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGgc                                               <  1:7179467/68‑1 (MQ=255)
                      tGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAggg                                                <  1:24280872/67‑1 (MQ=255)
                      tGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGgc                                               <  1:9749272/68‑1 (MQ=255)
                      tGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGgc                                               <  1:23068283/68‑1 (MQ=255)
                         tCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGgc                                               >  1:38473252/1‑65 (MQ=255)
                         tCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGgc                                               >  1:32016899/1‑65 (MQ=255)
                          cgcgcgTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTg                                           <  1:32823337/68‑1 (MQ=255)
                          cgcgcgTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTg                                           <  1:16926458/68‑1 (MQ=255)
                           gggcgTTGGCCAGACAAACACCGGACCATGTGCCGCGCGACCGGGCTGTTCACGGGGCAGGGCGCTgg                                          <  1:14024854/66‑1 (MQ=255)
                           gcgcgTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTgg                                          <  1:17344538/68‑1 (MQ=255)
                           gcgcgTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTgg                                          <  1:37828278/68‑1 (MQ=255)
                           gcgcgTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTgg                                          <  1:26137114/68‑1 (MQ=255)
                           gcgcgTTGGCCAGACAAACACCGGACGATGGGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTgg                                          <  1:4949986/68‑1 (MQ=255)
                               gTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATg                                      <  1:4244296/68‑1 (MQ=255)
                               gTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATg                                      <  1:14580185/68‑1 (MQ=255)
                                 tGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATggg                                    <  1:5965950/68‑1 (MQ=255)
                                 tGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATgg                                     <  1:15016593/67‑1 (MQ=255)
                                    ccAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGtt                                  <  1:31175796/67‑1 (MQ=255)
                                    ccAGACAAACACCGGACGATGTCCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGtt                                  <  1:2404367/67‑1 (MQ=255)
                                         cAAACACCGGCCGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAg                             <  1:15749374/67‑1 (MQ=255)
                                         cAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAg                             <  1:19610875/67‑1 (MQ=255)
                                         cAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGa                            >  1:5150369/1‑68 (MQ=255)
                                         cAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGa                            >  1:34668638/1‑68 (MQ=255)
                                         cAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGa                            >  1:11631997/1‑68 (MQ=255)
                                             cacCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGa                        <  1:8386949/68‑1 (MQ=255)
                                              acCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGa                        >  1:37947467/1‑67 (MQ=255)
                                              acCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGa                        >  1:10557148/1‑67 (MQ=255)
                                              acCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGa                        >  1:25238752/1‑67 (MQ=255)
                                               ccGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGAcc                      >  1:24461548/1‑68 (MQ=255)
                                                 ggACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAg                    <  1:20896895/68‑1 (MQ=255)
                                                 ggACGATGTGCCGCGCCACCGGGCTGTGCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAg                    <  1:9376086/68‑1 (MQ=255)
                                                  gACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGc                   >  1:2279416/1‑68 (MQ=255)
                                                   aCGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGc                   <  1:3418495/67‑1 (MQ=255)
                                                   aCGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCg                  >  1:3064577/1‑68 (MQ=255)
                                                   aCGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCg                  >  1:14369331/1‑68 (MQ=255)
                                                    cGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCg                  <  1:18062961/67‑1 (MQ=255)
                                                    cGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCg                  <  1:14234150/67‑1 (MQ=255)
                                                    cGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCg                  <  1:23597333/67‑1 (MQ=255)
                                                    cGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCg                  <  1:26728860/67‑1 (MQ=255)
                                                    cGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCg                  <  1:12588746/67‑1 (MQ=255)
                                                    cGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGAGTGACCAGCg                  <  1:7477493/67‑1 (MQ=255)
                                                      aTGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTaa               >  1:36815874/1‑68 (MQ=255)
                                                        gtgCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATg             >  1:21880172/1‑68 (MQ=255)
                                                        gtgCCGCGCCACCGGGCTGGGCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATg             <  1:4728088/68‑1 (MQ=255)
                                                         tgCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATgg            >  1:13762619/1‑68 (MQ=255)
                                                          gccgcgccaCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATgg            <  1:25597940‑M2/58‑1 (MQ=255)
                                                          gccccgccaCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAACgg            <  1:8682962‑M2/58‑1 (MQ=255)
                                                             gcgccaCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCg         >  1:21612071‑M2/7‑67 (MQ=255)
                                                             gcgccaCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCg         >  1:2794403‑M2/7‑67 (MQ=255)
                                                               gccaCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTc       >  1:36330247‑M2/5‑67 (MQ=255)
                                                               gccaCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTc       <  1:13308659‑M2/63‑1 (MQ=255)
                                                               gccaCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTc       <  1:11074926‑M2/63‑1 (MQ=255)
                                                               gccaCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTc       <  1:16642164‑M2/63‑1 (MQ=255)
                                                               gccaCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTc       <  1:12870636‑M2/63‑1 (MQ=255)
                                                                 caCCTGGCTGTTCACGTGGCAGGGCGCTGGTATGGGGTGCCAGATTGACCAGCGTAATGGGCGTccc     <  1:20374583‑M2/65‑1 (MQ=255)
                                                                 caCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCa    <  1:21098594‑M2/66‑1 (MQ=255)
                                                                 caCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCa    <  1:2973946‑M2/66‑1 (MQ=255)
                                                                 caCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCa    <  1:37534291‑M2/66‑1 (MQ=255)
                                                                 caCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCa    <  1:27503185‑M2/66‑1 (MQ=255)
                                                                 caCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCa    <  1:31493730‑M2/66‑1 (MQ=255)
                                                                 caCCGGGCTGTGCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCa    <  1:22221100‑M2/66‑1 (MQ=255)
                                                                  aCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCAt   <  1:38288475‑M2/67‑1 (MQ=255)
                                                                  aCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCAt   <  1:6933792‑M2/67‑1 (MQ=255)
                                                                  aCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCAt   <  1:7777050‑M2/67‑1 (MQ=255)
                                                                  aCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCAt   <  1:12180560‑M2/67‑1 (MQ=255)
                                                                  aCCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCAt   <  1:28267288‑M2/67‑1 (MQ=255)
                                                                  aCCGGGCGGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCAt   <  1:35912241‑M2/67‑1 (MQ=255)
                                                                   ccGGGCTGTTCACGGGGCAGGGCGCTGGTTTGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCAtt  <  1:18805886/68‑1 (MQ=255)
                                                                   ccGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCAtt  <  1:19090865/68‑1 (MQ=255)
                                                                   ccGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCAtt  <  1:6342589/68‑1 (MQ=255)
                                                                   ccGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCAtt  <  1:27058213/68‑1 (MQ=255)
                                                                   ccGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCAtt  <  1:31725680/68‑1 (MQ=255)
                                                                   |                                                                   
CGTAGAAAGGTATTTCCAGCGTTGCTCGCGCGTTGGCCAGACAAACACCGGACGATGTGCCGCGCCACCGGGCTGTTCACGGGGCAGGGCGCTGGTATGGGTTGCCAGATTGACCAGCGTAATGGGCGTCCCATT  >  CP009273/391234‑391368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.