| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 577278 | 317 (0.670) | 19 (0.050) | 7/96 | NT | 6.5% | pseudogene (163/438 nt) | tfaD | pseudogene, DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
| ? | CP009273 | = 1426905 | NA (NA) | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein | |||||
Only 100 of 542 total aligned reads displayed.
AGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGAT > CP009273/577211‑577345 | ggggCCGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGGTATCGCCGGAAgg > 1:20600418/1‑68 (MQ=255) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:11571410/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:6306304/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:35002421/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:35726956/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:33789059/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:15243676/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:14145959/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:3816645/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:27798288/1‑68 (MQ=33) cgcgTTATTTATTTCTGAACTCGGTCCGGTACCGGAAAATGTCACCTGGTTCTCGCCGGAAGccacgg < 1:5653038‑M1/68‑7 (MQ=255) atttCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGccacgtcataaaccgt < 1:7398414‑M1/68‑17 (MQ=255) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt > 1:13558981/1‑67 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt > 1:17206709/1‑67 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:35855556/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:31416965/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:20390870/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt > 1:5381248/1‑67 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:12672436/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt > 1:1204845/1‑67 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:22662516/67‑1 (MQ=31) tCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa > 1:10527282/1‑68 (MQ=35) cGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGccacgtcataaaccgttttaccccgat < 1:3090747‑M1/68‑28 (MQ=255) cGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAg < 1:23562524/68‑1 (MQ=35) gggccGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:10893842/65‑1 (MQ=25) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:34519503/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:15629662/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:15082059/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:37161167/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:19431649/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:26756252/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:25715828/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:38449559/68‑1 (MQ=35) gTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGATGTGGAACGGTACAg > 1:27621954/1‑66 (MQ=25) gTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAg > 1:19795231/1‑66 (MQ=35) tCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:27152712/61‑1 (MQ=31) tCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAg > 1:29431317/1‑65 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTgg < 1:31704122/68‑1 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTgg < 1:21324337/68‑1 (MQ=35) cGTTACCGGAAAATGTTACCTGGGTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTgg < 1:12997870/68‑1 (MQ=25) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:18735715/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:4640779/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:3663705/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:8177062/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:16484432/68‑1 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa > 1:24165898/1‑68 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa > 1:12358967/1‑68 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa > 1:27317915/1‑68 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa > 1:19129906/1‑68 (MQ=35) cGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGaaa < 1:38846999/68‑1 (MQ=37) ggAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAg < 1:17760857/68‑1 (MQ=39) gcaaaatgTAACCTGGTTATCGCCGCAACccacgtcaaaaaccgtttaaccccgatgatcttcaacga < 1:4300108‑M1/66‑40 (MQ=255) aaTGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgc > 1:24528197/1‑68 (MQ=255) aTGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgga > 1:33581592/1‑66 (MQ=255) gTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcaga > 1:8962819/1‑68 (MQ=255) ccTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagca < 1:13408812/68‑1 (MQ=255) ccTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagca < 1:22542477/68‑1 (MQ=255) ccTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagca < 1:9237754/68‑1 (MQ=255) cTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcag > 1:36324674/1‑68 (MQ=255) cTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcag > 1:32838649/1‑68 (MQ=255) cTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcag > 1:5988426/1‑68 (MQ=255) cTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcag > 1:9669864/1‑68 (MQ=255) cTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcag > 1:22131325/1‑68 (MQ=255) tGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcaga < 1:7985787/68‑1 (MQ=255) gTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGaaa > 1:5063920/1‑68 (MQ=255) ttATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGaaaa > 1:8410782/1‑68 (MQ=255) ttATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGaaaa > 1:19936490/1‑68 (MQ=255) ttATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGaaaa > 1:28395828/1‑68 (MQ=255) tATCGCCGGGAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGaaaa > 1:5911887/1‑67 (MQ=255) tATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGaaaa > 1:2871201/1‑67 (MQ=255) cGCCGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatc < 1:28081693‑M1/67‑59 (MQ=255) gCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt < 1:31213235/68‑1 (MQ=255) gCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:18237776/1‑68 (MQ=255) ccGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatc > 1:20947387‑M1/1‑7 (MQ=255) ccGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:1690320/1‑67 (MQ=255) cGGAAGccacttcataaagcgttttaccccgattatcttcaacgagatgccacgatgactcatcact < 1:36800879‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaacggttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:16101687‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:7198540‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:6878564‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:11838248‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:34278439‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:3470057‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:18156484‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:32582685‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:2330217‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:26178268‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:2531790‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:2014644‑M1/67‑62 (MQ=255) cGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGtt < 1:32513249/67‑1 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:14678941‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:10242761‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:11240733‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:26492437‑M1/68‑64 (MQ=255) aaGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttg > 1:35446367‑M1/1‑3 (MQ=255) aaGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttg > 1:14361013‑M1/1‑3 (MQ=255) aGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttga < 1:21832807‑M1/68‑67 (MQ=255) aGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGa < 1:29856991/68‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:3047356‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:9470728‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:37701377‑M1/1‑1 (MQ=255) | AGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGAT > CP009273/577211‑577345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |