| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 577278 | 317 (0.670) | 19 (0.050) | 7/96 | NT | 6.5% | pseudogene (163/438 nt) | tfaD | pseudogene, DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
| ? | CP009273 | = 1426905 | NA (NA) | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein | |||||
Only 100 of 375 total aligned reads displayed.
GATGAGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGC > CP009273/1426848‑1426971 | gatgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCa > 1:4521624/1‑67 (MQ=31)gatgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCa > 1:31686327/1‑67 (MQ=31) tgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAc > 1:24895638/1‑67 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACTGTTTATGACGTGGCTTCCGGCAAcgc < 1:36574228/68‑1 (MQ=25) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:16915360/68‑1 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:35482487/68‑1 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:31775685/68‑1 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:31263073/68‑1 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGGTTATGACGTGGCTTCCGGCAAcgc < 1:19698208/68‑1 (MQ=25) gaGGCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:2567720/68‑1 (MQ=25) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgcg < 1:13712297/67‑1 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:10340054/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:21023007/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:30991119/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:35270973/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:36209424/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:38987696/1‑68 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:34503772/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:37823511/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:20557596/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:20138376/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:29044639/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:18713502/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:17096097/68‑1 (MQ=35) tGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttatttat > 1:2044700/1‑68 (MQ=35) ggCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt < 1:38092873/68‑1 (MQ=35) cATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:17559840/1‑66 (MQ=35) cATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:22795659/1‑66 (MQ=35) cATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTatttattt < 1:35748767/67‑1 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:25098651/1‑65 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:23539083/1‑65 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:6514187/1‑65 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTc < 1:26835680/67‑1 (MQ=35) aTCTCGGTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTc < 1:12864153/67‑1 (MQ=25) tctcGTTGAAGATCATCGGGGTAAAACGGTTAATGACGTGGCTTCCGGCAAGGCGTTATTTATTTCTg < 1:39140467/68‑1 (MQ=11) tcGTTGAAGATCATCGGTGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGa > 1:16512552/1‑67 (MQ=255) cGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTCGCTTCCGGCAACGCCTTATTTATTTCTGa > 1:21956050/1‑66 (MQ=255) gTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACt < 1:5327163/68‑1 (MQ=35) aaGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCgg > 1:5784137/1‑67 (MQ=35) aaGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCgg > 1:24404715/1‑67 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:10025017/67‑1 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt > 1:33842707/1‑67 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:28333415/67‑1 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:7687722/67‑1 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:725476/1‑68 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:27887916/1‑68 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:19365694/1‑68 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:9032239/1‑68 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:111121/1‑68 (MQ=35) atcatcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTATGAACTCGGTCCg > 1:3850368/1‑68 (MQ=25) tcatcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCg < 1:9482408/67‑1 (MQ=35) atcGGGGTAAAACGGTTTATGACGTTGCTTCCTGCAACGCGTTATTTATTTCTGAACTCGGTCCGtt > 1:21402522/1‑67 (MQ=255) atcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGtt > 1:37465374/1‑67 (MQ=35) tcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTa > 1:36949166/1‑67 (MQ=35) tcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTAc < 1:29904667/68‑1 (MQ=35) tcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTAc < 1:24697880/68‑1 (MQ=35) ggggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCg < 1:21544319/68‑1 (MQ=35) ggggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCg > 1:9127963/1‑68 (MQ=35) ggggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCg < 1:34813199/68‑1 (MQ=35) ggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCgaa > 1:4117650/1‑66 (MQ=25) ggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGa > 1:12494650/1‑68 (MQ=35) aaaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGaaaa < 1:12239844/68‑1 (MQ=35) aaaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGaaaa > 1:5122306/1‑68 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:7387284/68‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:2967047/68‑1 (MQ=35) ccGGTTTATGACGTGGCTTCCGGCACCGCGTTATTTATTTCTGACCTAGGTCCGGTACCGGAAAATGt > 1:28621096/2‑68 (MQ=11) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:8829513/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:8135405/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:31914205/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:11912917/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:30383444/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:18376155/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:13818659/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:4914520/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:14276924/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt < 1:20782313/68‑1 (MQ=35) cGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGtt > 1:32382872/1‑68 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGtt > 1:2613132/1‑67 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTa < 1:10601535/68‑1 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTa < 1:23078972/68‑1 (MQ=35) ttATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTa > 1:11198575/1‑65 (MQ=35) ttATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTAcc < 1:16044896/67‑1 (MQ=35) aTGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTgg < 1:9782013/68‑1 (MQ=35) aTGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTgg < 1:26248461/68‑1 (MQ=35) tGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGt < 1:34907160/68‑1 (MQ=35) tGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGt < 1:5510002/68‑1 (MQ=35) tGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGt > 1:6918656/1‑68 (MQ=35) gACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGtt > 1:32688053/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:3257018/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:16703193/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:15741940/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:27167258/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:29410024/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:14698492/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:10798717/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:33384801/1‑68 (MQ=35) gTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATc < 1:15208991/68‑1 (MQ=35) gTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATc < 1:35201965/68‑1 (MQ=35) ggCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGc < 1:6062249/68‑1 (MQ=35) gCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATg < 1:22514886/52‑1 (MQ=35) | GATGAGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGC > CP009273/1426848‑1426971 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |