| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 725724 | NA (NA) | 36 (0.090) | 17/94 | NT | NA | coding (686/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 725738 | NA (NA) | coding (700/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
Only 100 of 294 total aligned reads displayed.
ACAGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCAC > CP009273/725695‑725790 | acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg > 1:9864799/1‑68 (MQ=31)acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg > 1:14567382/1‑68 (MQ=31)acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg > 1:1426420/1‑68 (MQ=31)acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg > 1:10982843/1‑68 (MQ=31)acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg > 1:28229978/1‑68 (MQ=31)acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGAGGGTGCCg > 1:2038264/1‑68 (MQ=14) ccGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg > 1:33558878/2‑68 (MQ=25) aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg > 1:11783838/1‑68 (MQ=35) aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg > 1:12197285/1‑68 (MQ=35) aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg > 1:29141061/1‑68 (MQ=35) aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg > 1:7967137/1‑68 (MQ=35) aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg > 1:10925221/1‑68 (MQ=35) aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg > 1:19066856/1‑68 (MQ=35) aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg > 1:22970172/1‑68 (MQ=35) aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg > 1:18385606/1‑68 (MQ=35) aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg > 1:15479687/1‑68 (MQ=35) aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg > 1:37799110/1‑68 (MQ=35) aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg > 1:6676835/1‑68 (MQ=35) cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg < 1:28513594/67‑1 (MQ=35) cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg < 1:25002573/67‑1 (MQ=35) cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg < 1:36610655/67‑1 (MQ=35) cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg > 1:151451/1‑67 (MQ=35) gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc > 1:4643831/1‑68 (MQ=35) gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc > 1:21860967/1‑68 (MQ=35) gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc > 1:8272820/1‑68 (MQ=35) gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc > 1:32176041/1‑68 (MQ=35) gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc > 1:13971791/1‑68 (MQ=35) gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc > 1:1435719/1‑68 (MQ=35) gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc > 1:38284165/1‑68 (MQ=35) tCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc > 1:7581004/1‑66 (MQ=35) tCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc > 1:30729864/1‑66 (MQ=35) tCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc > 1:39022196/1‑66 (MQ=35) tCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc > 1:19604484/1‑66 (MQ=35) tCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCAc < 1:26445822/68‑1 (MQ=35) ccACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACt < 1:33813911/68‑1 (MQ=35) ccACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACt < 1:7783825/68‑1 (MQ=35) ccACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACt < 1:8939774/68‑1 (MQ=35) ccACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACt < 1:12743303/68‑1 (MQ=35) ccACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACt < 1:9191409/68‑1 (MQ=35) ccACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACt < 1:5529473/68‑1 (MQ=35) ccACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACt < 1:25932145/68‑1 (MQ=35) cACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACt > 1:38797619/1‑67 (MQ=35) cACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACt > 1:35346946/1‑67 (MQ=35) cACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACt > 1:9670285/1‑67 (MQ=35) cACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACt > 1:1036541/1‑67 (MQ=35) cACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACt > 1:20659556/1‑67 (MQ=35) cACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACt > 1:15717943/1‑67 (MQ=35) cACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACt > 1:2138024/1‑67 (MQ=35) cACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACt > 1:16307058/1‑67 (MQ=35) aCCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACtt > 1:13367618/1‑67 (MQ=35) aCCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACtt > 1:19421390/1‑67 (MQ=35) aCCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACtt > 1:17125583/1‑67 (MQ=35) aCCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACtt > 1:27456524/1‑67 (MQ=35) cgcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCg > 1:1766837/1‑68 (MQ=35) gcgAAGCCGCCGGTGATTTCGCCGCTGAATTCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCgg < 1:35874820/68‑1 (MQ=11) gcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCgg < 1:16682307/68‑1 (MQ=35) gcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCgg < 1:31611001/68‑1 (MQ=35) gcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCgg < 1:37400040/68‑1 (MQ=35) gcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCgg < 1:24467212/68‑1 (MQ=35) gcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCgg < 1:5770458/68‑1 (MQ=35) gcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCgg < 1:5998868/68‑1 (MQ=35) gcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCgg < 1:6340159/68‑1 (MQ=35) gcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCgg < 1:6884598/68‑1 (MQ=35) gcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCgg < 1:9398251/68‑1 (MQ=35) gcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCgg < 1:29645201/68‑1 (MQ=35) gcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCgg < 1:2564556/68‑1 (MQ=35) gcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCgg < 1:23184689/68‑1 (MQ=35) gcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCgg < 1:27362649/68‑1 (MQ=35) gcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCg > 1:11985290/1‑67 (MQ=35) gcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCg > 1:25782540/1‑67 (MQ=35) gcgAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCg > 1:38516126/1‑67 (MQ=35) gcgAAGCCGCCGGGGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCgg < 1:24693740/68‑1 (MQ=25) gAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCt < 1:28917721/68‑1 (MQ=35) aGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTgg < 1:10224347/68‑1 (MQ=35) aGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTgg < 1:31079094/68‑1 (MQ=35) aGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTgg < 1:24204025/68‑1 (MQ=35) aGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTgg < 1:23920301/68‑1 (MQ=35) aGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTgg < 1:22269182/68‑1 (MQ=35) aGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTgg < 1:38119479/68‑1 (MQ=35) aGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTgg < 1:32651113/68‑1 (MQ=35) aGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTgg < 1:19896691/68‑1 (MQ=35) aGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTgg < 1:34811122/68‑1 (MQ=35) gccgccGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGt > 1:19973235/1‑68 (MQ=35) gccgccGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACGTCCGGCTGGt > 1:5068221/1‑68 (MQ=25) cacgccgGTGAATTCAGCGGCGAAATCACCGGCGTGGCGGATGGTGCCGGGCGTCACTTCCGGCTGGt > 1:13037778/3‑68 (MQ=255) cgccgGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGt < 1:17366233/66‑1 (MQ=35) cgccgGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGt < 1:20106077/66‑1 (MQ=35) cgccgGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGt < 1:27733019/66‑1 (MQ=35) cgccgGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGt > 1:2728150/1‑66 (MQ=35) cgccgGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGt < 1:15882490/66‑1 (MQ=35) cgccgGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGt < 1:20826508/66‑1 (MQ=35) cgccgGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGt > 1:18287651/1‑66 (MQ=35) cgccgGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGt < 1:21712262/66‑1 (MQ=35) cgccgGTGAATTCAGCGGCGAAATCACCGGCGGGACGGATGGTGCCGGGCGTCACTTCCGGCTGGt < 1:18059875/66‑1 (MQ=255) cgGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGa < 1:149614/68‑1 (MQ=35) cgGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGa < 1:13720913/68‑1 (MQ=35) cgGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGa < 1:26959251/68‑1 (MQ=35) cgGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGa < 1:10597088/68‑1 (MQ=35) ggTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGa > 1:32130366/1‑67 (MQ=35) gAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCAc < 1:7116178/68‑1 (MQ=35) | ACAGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCAC > CP009273/725695‑725790 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |