New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 772557 =137 (0.290)6 (0.010) 4/98 NT 6.6% coding (760/1266 nt) tolA membrane anchored protein in TolA‑TolQ‑TolR complex
?CP009273 772577 = 50 (0.120)coding (780/1266 nt) tolA membrane anchored protein in TolA‑TolQ‑TolR complex

Only 100 of 245 total aligned reads displayed.

GCTGCAGCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGC  >  CP009273/772491‑772624
                                                                  |                                                                   
gctgcagcttttgccgctgccgcttttttgtctgcggcggctttttctgccgctgctttcttatcagc                                                                    >  1:37515390‑M1/67‑68 (MQ=255)
 CTGCAGCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGgc                                                                    >  1:18065326‑M1/1‑67 (MQ=255)
  tgcagcttttgccgctgccgcttttttgtctgcggcggctttttctgccgctgctttcttatcagct                                                                   <  1:2191657‑M1/3‑1 (MQ=255)
  tgcagcttttgccgctgccgcttttttgtctgcggcggctttttctgccgctgctttcttatcagc                                                                    >  1:11902890‑M1/65‑66 (MQ=255)
  tgcagcttttgccgctgccgattttttgtctgcggcggctttttctgccgctgctttcttatcagc                                                                    >  1:23110775‑M1/65‑66 (MQ=255)
   GCAGCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGgctgc                                                                 >  1:16835747‑M1/1‑68 (MQ=255)
   GCAGCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGgctgc                                                                 >  1:19455720‑M1/1‑68 (MQ=255)
     AGCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGgctgct                                                                >  1:25144973‑M1/1‑67 (MQ=255)
     AGCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGgctgct                                                                >  1:11209992‑M1/1‑67 (MQ=255)
     AGCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGgctgct                                                                >  1:28796959‑M1/1‑67 (MQ=255)
     AGCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGctgctg                                                               <  1:5063524‑M1/68‑1 (MQ=255)
      GCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGa                                                              <  1:28294907‑M1/68‑1 (MQ=255)
      GCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGa                                                              <  1:29814237‑M1/68‑1 (MQ=255)
      GCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGa                                                              <  1:8804042‑M1/68‑1 (MQ=255)
        ttttgccgctgccgcttttttgtctgcggcggctttttctgccgctgctttcttatcaGctgctg                                                               >  1:31329818‑M1/59‑65 (MQ=255)
        ttttgccgctgccgcttttttgtctgcggcggctttttctgccgctgctttcttatcaGctgctg                                                               >  1:2756328‑M1/59‑65 (MQ=255)
           tgccgctgccgcttttttgtctgcggcggctttttctgccgctgctttcttatcaGCTGCTGAAAAgg                                                         >  1:28999927‑M1/56‑68 (MQ=255)
           tAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGGTGAAAAg                                                          >  1:7158299/1‑67 (MQ=255)
           tAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAgg                                                         <  1:3052703/68‑1 (MQ=255)
           tAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAgg                                                         <  1:32893238/68‑1 (MQ=255)
           tAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAg                                                          >  1:25899074/1‑67 (MQ=255)
             aGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgca                                                       >  1:37180956/1‑68 (MQ=255)
             aGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgca                                                       >  1:25041672/1‑68 (MQ=255)
             aGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgca                                                       <  1:24132934/68‑1 (MQ=255)
             aGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgca                                                       >  1:28148611/1‑68 (MQ=255)
             aGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgca                                                       >  1:29575638/1‑68 (MQ=255)
             aGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgca                                                       >  1:13205372/1‑68 (MQ=255)
             aGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgca                                                       >  1:13074945/1‑68 (MQ=255)
             aGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAACCGGCTGCTGAAAAGgca                                                       >  1:35396781/1‑68 (MQ=255)
               aaaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagc                                                     >  1:38938810/1‑68 (MQ=255)
               aaaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagc                                                     >  1:33764953/1‑68 (MQ=255)
                aaGCTGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    <  1:4881778/68‑1 (MQ=255)
                aaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:17043402/1‑68 (MQ=255)
                aaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:29413636/1‑68 (MQ=255)
                aaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:3593887/1‑68 (MQ=255)
                aaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:13964148/1‑68 (MQ=255)
                aaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:211730/1‑68 (MQ=255)
                aaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:30770612/1‑68 (MQ=255)
                  gccgcttttttgtctgcggcggctttttctgccgctgctttcttatcaGCTGCTGAAAAGGCagcagc                                                  >  1:31724931‑M1/49‑68 (MQ=255)
                  gccgcttttttgtctgcggcggctttttctgccgctgctttcttatcaGCTGCTGAAAAGGCagcagc                                                  >  1:34725234‑M1/49‑68 (MQ=255)
                  gCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:10881351/1‑66 (MQ=255)
                  gCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:5344516/1‑66 (MQ=255)
                  gCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:16661539/1‑66 (MQ=255)
                  gCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:17739536/1‑66 (MQ=255)
                  gCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:28717395/1‑66 (MQ=255)
                    ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:22657666/66‑1 (MQ=255)
                    ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:32413449/66‑1 (MQ=255)
                    ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:31866068/66‑1 (MQ=255)
                    ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:7957823/66‑1 (MQ=255)
                    ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:73491/66‑1 (MQ=255)
                    ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:12798707/66‑1 (MQ=255)
                    ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:6499709/66‑1 (MQ=255)
                    ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:27972632/66‑1 (MQ=255)
                    ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:27279817/66‑1 (MQ=255)
                    ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:19119582/66‑1 (MQ=255)
                    ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:20066594/66‑1 (MQ=255)
                    ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:39084975/66‑1 (MQ=255)
                    ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:24683946/66‑1 (MQ=255)
                    ggCAGCAGAGAAAGCTGCAGCCGACAAAAAACCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:18537601/66‑1 (MQ=255)
                     gcagcaGCGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa                                               >  1:17612902/1‑68 (MQ=255)
                     gcagcaGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa                                               >  1:14447705/1‑68 (MQ=255)
                     gcagcaGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa                                               >  1:10024468/1‑68 (MQ=255)
                      cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa                                               <  1:6620856/67‑1 (MQ=255)
                      cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa                                               <  1:35428684/67‑1 (MQ=255)
                      cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa                                               <  1:12512117/67‑1 (MQ=255)
                       ttttttgtctgcggcggctttttctgccgctgctttcttatcaGCTGCTGAAAAGGCAGCAGCTGATa                                             >  1:19892109‑M1/44‑68 (MQ=255)
                        gcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATaa                                            >  1:35269838/1‑68 (MQ=255)
                         cagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAg                                           >  1:12117391/1‑68 (MQ=255)
                          agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa                                             <  1:38009418/65‑1 (MQ=255)
                          agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa                                             <  1:1016621/65‑1 (MQ=255)
                          agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa                                             <  1:18692509/65‑1 (MQ=255)
                          agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa                                             <  1:26737437/65‑1 (MQ=255)
                          agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAg                                           <  1:9047029/67‑1 (MQ=255)
                             gaAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGa                                          <  1:33818157/65‑1 (MQ=255)
                               aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca                                     >  1:26413044/1‑68 (MQ=255)
                               aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca                                     >  1:19748930/1‑68 (MQ=255)
                                agctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca                                     >  1:11641235‑M2/11‑67 (MQ=255)
                                 gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc                                   >  1:27035408‑M2/10‑68 (MQ=255)
                                 gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc                                   >  1:36877861‑M2/10‑68 (MQ=255)
                                 gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc                                   >  1:8169292‑M2/10‑68 (MQ=255)
                                 gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc                                   >  1:31168822‑M2/10‑68 (MQ=255)
                                  ctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCg                                  >  1:10405234‑M2/9‑68 (MQ=255)
                                  ctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCg                                  >  1:11056557‑M2/9‑68 (MQ=255)
                                    gcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGc                                >  1:34035928‑M2/7‑68 (MQ=255)
                                    gcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGc                                >  1:15275633‑M2/7‑68 (MQ=255)
                                    gcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGc                                >  1:21509279‑M2/7‑68 (MQ=255)
                                       gccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGa                             >  1:4189157‑M2/4‑68 (MQ=255)
                                        ccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGaa                            >  1:36445957‑M2/3‑68 (MQ=255)
                                         cGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGaaa                           <  1:16278091‑M2/67‑1 (MQ=255)
                                                   gcagcaGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc                 >  1:5303120/1‑68 (MQ=255)
                                                   gcagcaGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc                 >  1:152460/1‑68 (MQ=255)
                                                   gcagcaGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc                 >  1:2523144/1‑68 (MQ=255)
                                                        agAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACa            >  1:38783688/1‑68 (MQ=255)
                                                        agAAAAAGCGGCGGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGAc             <  1:20920564/67‑1 (MQ=255)
                                                           aaaaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaa         <  1:37778699/68‑1 (MQ=255)
                                                           aaaaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaa           <  1:30052563/66‑1 (MQ=255)
                                                             aaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa       >  1:36696433/1‑68 (MQ=255)
                                                              aGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAag      <  1:12560704/68‑1 (MQ=255)
                                                                cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAACGGCAGAAAAAGCCGACGCAGACAAAAAagcg    >  1:36625227/1‑68 (MQ=255)
                                                                  GCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcggc  <  1:4547365‑M1/68‑1 (MQ=255)
                                                                  |                                                                   
GCTGCAGCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGC  >  CP009273/772491‑772624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.