| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 772557 = | 137 (0.290) | 6 (0.010) | 4/98 | NT | 6.6% | coding (760/1266 nt) | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex |
| ? | CP009273 | 772577 = | 50 (0.120) | coding (780/1266 nt) | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex | |||||
Only 100 of 149 total aligned reads displayed.
GGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCAGCTG > CP009273/772511‑772644 | ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTg < 1:2134829/68‑1 (MQ=255)ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTg < 1:31462464/68‑1 (MQ=255) gcagcaGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa > 1:10024468/1‑68 (MQ=255) gcagcaGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa > 1:14447705/1‑68 (MQ=255) cagccgCGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCACCAGCTGa < 1:7159512/67‑1 (MQ=38) cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa < 1:3063051/67‑1 (MQ=255) cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa < 1:14497315/67‑1 (MQ=255) cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa < 1:12512117/67‑1 (MQ=255) cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa < 1:4517718/67‑1 (MQ=255) cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa < 1:19846242/67‑1 (MQ=255) cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa < 1:37350971/67‑1 (MQ=255) cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa < 1:37527055/67‑1 (MQ=255) gcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATaa > 1:31982113/1‑68 (MQ=255) gcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATaa > 1:35269838/1‑68 (MQ=255) cagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAg > 1:12117391/1‑68 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:17757668/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:18692509/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:26737437/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:36568528/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:38009418/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:1016621/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:797667/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:11060248/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAg < 1:9047029/67‑1 (MQ=255) gaAAGCTGCAGCCGACAAAAAACCAGCAGAAAACGCGGCTGCTGAAAAGGCAGCAGCTGATAAGa < 1:4538790/65‑1 (MQ=255) aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca > 1:26413044/1‑68 (MQ=255) aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca > 1:36967382/1‑68 (MQ=255) aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca > 1:19748930/1‑68 (MQ=255) aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca > 1:18428973/1‑68 (MQ=255) agctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca > 1:11641235‑M2/11‑67 (MQ=255) gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc > 1:31168822‑M2/10‑68 (MQ=255) gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc > 1:25160600‑M2/10‑68 (MQ=255) gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc > 1:6873870‑M2/10‑68 (MQ=255) gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc > 1:8169292‑M2/10‑68 (MQ=255) gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc > 1:34278371‑M2/10‑68 (MQ=255) gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc > 1:27035408‑M2/10‑68 (MQ=255) gcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGc > 1:34035928‑M2/7‑68 (MQ=255) gcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGc > 1:15275633‑M2/7‑68 (MQ=255) gcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGc > 1:21509279‑M2/7‑68 (MQ=255) agccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAg > 1:32470626‑M2/5‑68 (MQ=255) ccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGaa > 1:13839545‑M2/3‑68 (MQ=255) ccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGaa > 1:36445957‑M2/3‑68 (MQ=255) ccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGaa > 1:4870451‑M2/3‑68 (MQ=255) ccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGaa > 1:12962718‑M2/3‑68 (MQ=255) aaaaaGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAgcc > 1:37875252/1‑68 (MQ=255) aaaGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAgccgc < 1:36865668/68‑1 (MQ=255) aaaGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAgccgc < 1:12521400/68‑1 (MQ=255) aaaGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAgccg > 1:4950236/1‑67 (MQ=255) gcagcaGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc > 1:5303120/1‑68 (MQ=255) gcagcaGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc > 1:2523144/1‑68 (MQ=255) gcagcaGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc > 1:19461196/1‑68 (MQ=255) gcagcaGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc > 1:29525070/1‑68 (MQ=255) gcagAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAg > 1:247367/1‑67 (MQ=255) agAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACa > 1:38783688/1‑68 (MQ=255) agAAAAAGCGGCGGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGAc < 1:20920564/67‑1 (MQ=255) aaaaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaa < 1:30052563/66‑1 (MQ=255) tatcagctgctgccttttcagcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa > 1:19892109‑M2/26‑68 (MQ=255) aaGCGGCTGCTGAAAAGGCTGCAGCGGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaa < 1:16901241/66‑1 (MQ=255) aaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGCCaaaaaa > 1:17736603/1‑68 (MQ=255) aaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa > 1:28107037/1‑68 (MQ=255) aaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa > 1:34901705/1‑68 (MQ=255) aaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa > 1:28627457/1‑68 (MQ=255) aaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa > 1:36696433/1‑68 (MQ=255) aGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa > 1:10118468/1‑67 (MQ=255) tcagctgctgccttttcagcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagc > 1:18187710‑M2/24‑68 (MQ=255) cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCTCAAAAAGCCGCCGCAGACAAAAAagcg > 1:10920267/1‑68 (MQ=255) cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAACGCCGCCGCAGACAAAAAagcg > 1:5327319/1‑68 (MQ=255) cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg > 1:35406739/1‑68 (MQ=255) cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg > 1:11897274/1‑68 (MQ=255) cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg > 1:6603082/1‑68 (MQ=255) cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg > 1:5545941/1‑68 (MQ=255) cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg > 1:16096648/1‑68 (MQ=255) cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg > 1:23129603/1‑68 (MQ=255) cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAACGGCAGAAAAAGCCGACGCAGACAAAAAagcg > 1:36625227/1‑68 (MQ=255) gctgctgccttttctgcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAcgcggc > 1:12005049‑M2/21‑68 (MQ=255) gctgctgccttttcagcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcggc > 1:34725234‑M2/21‑68 (MQ=255) gctgctgccttttcagcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcggc > 1:31724931‑M2/21‑68 (MQ=255) GCTGCTGAAAAGGCAGCAGCTGATAAGAACGCAGCGCCAGAAAAAGCCGCCGCAGACAAAAAagcggc < 1:16706665‑M1/68‑1 (MQ=255) aaaGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaa > 1:9494127/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAACGCGGCAGCGGCaaaa > 1:32219748/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:23698395/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:31278354/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:22749611/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:38317848/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:35568760/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:2409640/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:24835398/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:36404514/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:15045507/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:30679670/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGAGGCaaaa > 1:14629533/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGAGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaa > 1:22293336/1‑67 (MQ=255) ggCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:35679488/1‑67 (MQ=255) gcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGc > 1:27880743‑M2/6‑68 (MQ=255) gcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAATCGGCAGCGGCAAAAGCTGCa > 1:23110775‑M2/3‑66 (MQ=255) gcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCa > 1:2583109‑M2/3‑66 (MQ=255) gcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCa > 1:10565340‑M2/3‑66 (MQ=255) gcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCAGc > 1:37515390‑M2/3‑68 (MQ=255) tGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCAGc < 1:33482830/66‑1 (MQ=255) tGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCAGCTg > 1:11774066/1‑68 (MQ=255) | GGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCAGCTG > CP009273/772511‑772644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |