| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1641311 = | 428 (0.910) | 20 (0.050) | 11/90 | NT | 5.9% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 292 (0.770) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
Only 100 of 526 total aligned reads displayed.
TTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCG > CP009273/1641244‑1641376 | aataagattgaaaccaagatcgattcgggtgtgtgcatatccattcatagggtagattcttaagtcgc > 1:7287634‑M1/66‑68 (MQ=255) aaaagattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtcgcg > 1:18979153‑M1/65‑68 (MQ=255) aaaagattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtcgcg > 1:31170435‑M1/65‑68 (MQ=255) cGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGt > 1:3464985/1‑68 (MQ=255) ggACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGcgcg < 1:837412/66‑1 (MQ=255) ggACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGtt < 1:11233034/68‑1 (MQ=255) ggACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGtt < 1:18301208/68‑1 (MQ=255) cATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTc < 1:12703468/67‑1 (MQ=255) attgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtCGCGtt < 1:17302245‑M1/6‑1 (MQ=255) ttAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTgg < 1:22818237/68‑1 (MQ=255) ttAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTgg < 1:27311852/68‑1 (MQ=255) ttAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTg > 1:22255661/1‑67 (MQ=255) aGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCa > 1:12514358/1‑68 (MQ=255) gCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCat > 1:21715106/1‑68 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGCCTGACTCAGCGCGTTTCTGGCata > 1:8895738/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGCCTGACTCAGCGCGTTTCTGGCata > 1:15950630/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:32835224/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:24073329/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:1289823/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:37965700/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:27747030/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:28163388/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:29176185/1‑67 (MQ=255) aGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATc > 1:13818611/1‑67 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:38585347/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:35748862/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTATGGCATATcccc > 1:1562760/1‑68 (MQ=255) gCTATTAACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:23722427/1‑68 (MQ=255) cTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCg > 1:36432000/1‑68 (MQ=255) cTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCg > 1:5849542/1‑68 (MQ=255) tATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCg < 1:24536604/67‑1 (MQ=255) tATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCg < 1:10752221/67‑1 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:13368569/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:37017630/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:20051968/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:21273764/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:30618976/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:18660502/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:5635522/1‑68 (MQ=255) tACCATAACGCCTCATTACGAGCACCGCCCAGACTGTCTCAGCGCGTTTCTGGCATATCCACGGTaaa > 1:29560229/1‑68 (MQ=255) aCCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:21554581/1‑67 (MQ=255) aCCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:38878790/1‑67 (MQ=255) aCCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:14715138/1‑67 (MQ=255) ccATAACGCCTCATTACGCGCACCGCCCAGACTGCCTCAGCGCGTTTCTGGCATGTCCCCGGTAAAAc > 1:3240348/1‑68 (MQ=255) ccATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAAc < 1:20882303/68‑1 (MQ=255) ccATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAAc > 1:4023787/1‑68 (MQ=255) ccATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAAc < 1:6080275/68‑1 (MQ=255) ccATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAAc < 1:5205390/68‑1 (MQ=255) ccATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAAc > 1:28665250/1‑68 (MQ=255) cATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACa > 1:36650841/1‑68 (MQ=255) cATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACa > 1:13522664/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:25795148/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:37725143/1‑68 (MQ=255) aaCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGt < 1:19576237/68‑1 (MQ=255) aaCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGt < 1:17811236/68‑1 (MQ=255) aaCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGt < 1:23562714/68‑1 (MQ=255) aCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTa > 1:9122467/1‑68 (MQ=255) aCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTa > 1:7736189/1‑68 (MQ=255) aCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTa < 1:33300035/68‑1 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:16194991/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:26133909/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:30925098/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:20311801/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:16882266/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:14228878/1‑68 (MQ=255) aTTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTACCAAac > 1:38447928/1‑67 (MQ=255) aTTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAacc < 1:10937249/68‑1 (MQ=255) ttACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAacc > 1:4436154/1‑67 (MQ=255) tACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAaccc > 1:13139409/1‑66 (MQ=255) gcgcCCCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCCCCCg > 1:36029925/1‑68 (MQ=255) gcgcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCg > 1:23277932/1‑68 (MQ=255) cgcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGa > 1:25226219/1‑68 (MQ=255) gcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACTAGTAACAAACCACCCGaa > 1:31968533/1‑68 (MQ=255) gcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaa > 1:3158751/1‑68 (MQ=255) gcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaa > 1:29847685/1‑68 (MQ=255) aCCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaaaa < 1:35167643/68‑1 (MQ=255) agggtagattcttaagtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATg < 1:14640643‑M1/51‑1 (MQ=255) agggtagattcttaagtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATg < 1:11993924‑M1/51‑1 (MQ=255) cAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAaca < 1:26567002/68‑1 (MQ=255) gactgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACAcc > 1:32926109/1‑68 (MQ=255) gactgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACAcc > 1:19200525/1‑68 (MQ=255) gactgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACAcc > 1:26987477/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAACCCACCCGAAAATGACCCCCAg > 1:15352381/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACAcc < 1:9527948/66‑1 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:34425690/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:24903678/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:30096872/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:8097646/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:28493891/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:651881/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACAAg > 1:33618534/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATACCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:34058600/1‑68 (MQ=255) tgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGa < 1:31306604/68‑1 (MQ=255) tcttaagtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGa < 1:28928349‑M1/60‑1 (MQ=255) gactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGaa < 1:5039230/68‑1 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACCCCAGAAAc > 1:10103984/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:7095254/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:11591266/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:16528182/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:4727195/1‑67 (MQ=255) | TTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCG > CP009273/1641244‑1641376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |