| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1641311 = | 428 (0.910) | 20 (0.050) | 11/90 | NT | 5.9% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 292 (0.770) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
Only 100 of 426 total aligned reads displayed.
GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTAT > CP009273/1641312‑1641444 | GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAGATGAACACCAGAAACGCGAc > 1:13892671‑M1/1‑67 (MQ=255)GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAc > 1:25327654‑M1/1‑67 (MQ=255)GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAc > 1:26551814‑M1/1‑67 (MQ=255)GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAc > 1:8837311‑M1/1‑67 (MQ=255)GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAc > 1:15424910‑M1/1‑67 (MQ=255)GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACt > 1:37436550‑M1/1‑68 (MQ=255)GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACt > 1:5326817‑M1/1‑68 (MQ=255) tctggtgttcattttcgggtggtttgttccttgttttaccggggatatgccagaaacgcgACTTAAGa < 1:9390160‑M2/8‑1 (MQ=255) TCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGa > 1:31444722‑M1/1‑68 (MQ=255) TCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGa > 1:26316045‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:21301099‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:22459511‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa < 1:4029494‑M1/68‑1 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:36397491‑M1/1‑68 (MQ=255) GGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACCCCAGAGACGCGACTTAAGaa < 1:36174853‑M1/66‑1 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:7738486/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:10439976/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:20325823/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:20118547/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:19267187/1‑67 (MQ=255) atatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAc < 1:37847619/68‑1 (MQ=255) atatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAc < 1:14649409/68‑1 (MQ=255) atatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAc < 1:17223505/68‑1 (MQ=255) atatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAc < 1:322585/68‑1 (MQ=255) tatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGCCTTAAGAATCTAc > 1:12370344/1‑67 (MQ=255) tatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc < 1:34235763/68‑1 (MQ=255) tatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc < 1:4656527/68‑1 (MQ=255) tatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc < 1:32589777/68‑1 (MQ=255) tcattttcgggtggtttgttacttgttttaccggggatatgccagaaacgcgACTTAAGAATCTAcc < 1:12684528‑M2/15‑1 (MQ=255) tcattatcgcctggtatgatacttgttttcccggggatatgccagaaacgcgACTTAAGAATCTAccc < 1:13224223‑M2/16‑1 (MQ=255) atCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAccc < 1:21141908/68‑1 (MQ=255) tCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCt < 1:24053409/68‑1 (MQ=255) cattttcgggtggtttgttacttgttttaccggggatatgccagaaacgcgACTTAAGAATCTACCCt < 1:28340935‑M2/17‑1 (MQ=255) ccccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTa < 1:16619708/68‑1 (MQ=255) ccccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTa > 1:11612304/1‑68 (MQ=255) ttttcgggtggtttgttacttgttttaccggggatatgccagaaacgcgACTTAAGAATCTACCCTAt < 1:18239501‑M2/19‑1 (MQ=255) cccGGTAAAACAAGTAACAATCCACCCGAAATTGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:28858541/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATTAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:24464303/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:31615378/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:33353414/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:27353858/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:33830216/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:27681747/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:2488611/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:18709349/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:1898400/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:17917000/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:16272855/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:15707798/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:20822215/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:12833521/68‑1 (MQ=255) cGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGa < 1:4356062/68‑1 (MQ=255) gTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAAt > 1:56557/1‑68 (MQ=255) tAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAAt < 1:30674410/67‑1 (MQ=255) aaaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATgg > 1:36860609/1‑68 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:14507230/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:6927414/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:37105345/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:12163787/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:8142005/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:10254901/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:2600420/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:21950004/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:30051492/68‑1 (MQ=255) tggtttgttacttgttttaccggggatatgccagaaacgcgACTTAAGAATCTACCCTATGAATGGa < 1:21638149‑M2/26‑1 (MQ=255) tggtttgttacttgtttaaccggggatatgccagaaacgcgACTTAAGAATCTACCCTATGAATGGa < 1:7573645‑M2/26‑1 (MQ=255) tggattgttactcggtttaccggggatatgccagaaacgcgACTTAAGAATCCACCCTATGAATGGa < 1:7148707‑M2/26‑1 (MQ=255) aCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGata < 1:35524982/68‑1 (MQ=255) aaGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGatat > 1:18795099/1‑67 (MQ=255) aaGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGatat > 1:26736877/1‑67 (MQ=255) ttgttacttgttttaccggggatatgccacaaccgcgACTTAAGAATCTACCCTATGAATGGATATGc < 1:14178397‑M2/31‑1 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:23315742/68‑1 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:6545486/68‑1 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:37972153/68‑1 (MQ=255) gTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc > 1:15034395/1‑67 (MQ=255) aaCAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCa < 1:6276656/66‑1 (MQ=255) aCAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACACTATGAATGGATATGCAATc > 1:38022020/1‑68 (MQ=255) cAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCa > 1:19689297/1‑68 (MQ=255) aaCCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCaa > 1:11022467/1‑67 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:10010633/1‑68 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:38955887/1‑68 (MQ=255) caaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAAAGGATATGCACTCAACCg > 1:34686306/3‑68 (MQ=255) aaaaTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGa > 1:17468797/1‑67 (MQ=255) aaaTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATc < 1:35795970/68‑1 (MQ=255) aTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCtt > 1:5814058/1‑68 (MQ=255) acacCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGtt > 1:18065272/1‑68 (MQ=255) acacCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGtt > 1:34075561/1‑68 (MQ=255) acacCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGtt > 1:29076941/1‑68 (MQ=255) acacCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGtt > 1:29681011/1‑68 (MQ=255) acacCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGt < 1:38563534/67‑1 (MQ=255) aacgcgACTTAGGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtt > 1:26954388‑M2/7‑68 (MQ=255) aacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtt > 1:27857775‑M2/7‑68 (MQ=255) aacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtt > 1:16957426‑M2/7‑68 (MQ=255) aacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCt < 1:5197279‑M2/61‑1 (MQ=255) aacgcgACTTAAGAATCTACCCCATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtt > 1:23633970‑M2/7‑68 (MQ=255) cgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtttt > 1:31170435‑M2/5‑68 (MQ=255) cgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtttt > 1:31899056‑M2/5‑68 (MQ=255) gcgACTTAAGAATCTACCCTATGAATGGATATGCACACACCCGAATCGATCTTGGTTTCAATCttatt > 1:7287634‑M2/4‑68 (MQ=255) aCTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTa > 1:8389614/1‑67 (MQ=255) aCTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTAt < 1:33055321/68‑1 (MQ=255) | GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTAT > CP009273/1641312‑1641444 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |