| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1958516 = | 387 (0.820) | 24 (0.060) | 7/96 | NT | 7.7% | coding (792/2079 nt) | flhA | putative flagellar export pore protein |
| ? | CP009273 | 1958598 = | 247 (0.610) | coding (710/2079 nt) | flhA | putative flagellar export pore protein | |||||
Only 100 of 632 total aligned reads displayed.
TGAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTAT > CP009273/1958449‑1958583 | tcatggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:18390914‑M1/1‑1 (MQ=255)tcatggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:2282784‑M1/1‑1 (MQ=255)tcatggtcattaacattgtcggcgggttgctggtcgccgtgctgcaacatggcatgagcatgggacac < 1:2947790‑M1/1‑1 (MQ=255)tGAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCC > 1:9002289‑M1/1‑68 (MQ=255) gAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCC > 1:15692059‑M1/1‑67 (MQ=255) catggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:25999303‑M1/1‑1 (MQ=255) catggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:38620840‑M1/1‑1 (MQ=255) catggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:7061524‑M1/1‑1 (MQ=255) aaaGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCG < 1:12873429‑M1/68‑1 (MQ=255) gtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc < 1:3362430‑M1/6‑1 (MQ=255) gtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc < 1:8281324‑M1/6‑1 (MQ=255) gtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc < 1:17940325‑M1/6‑1 (MQ=255) gtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc < 1:34416024‑M1/6‑1 (MQ=255) gtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc < 1:25769208‑M1/6‑1 (MQ=255) aGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGC < 1:20747141‑M1/68‑1 (MQ=255) gCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCG > 1:25299970‑M1/1‑68 (MQ=255) gCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCG > 1:28626800‑M1/1‑68 (MQ=255) gCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCG > 1:13695441‑M1/1‑68 (MQ=255) cattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCGcggcgg < 1:27749183‑M1/8‑1 (MQ=255) tGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGt < 1:5891856/68‑1 (MQ=255) ttCACCTTCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGaaa < 1:22324739‑M1/67‑4 (MQ=255) cACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGaaa < 1:4395234/68‑1 (MQ=255) cATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATc > 1:36219466/1‑67 (MQ=255) cATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATc > 1:10733829/1‑67 (MQ=255) tCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCAcc > 1:23270360/1‑68 (MQ=255) tCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCAcc > 1:27412398/1‑68 (MQ=255) cTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAgc > 1:30703720/1‑67 (MQ=255) cTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAgc > 1:9501221/1‑67 (MQ=255) cTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAgc > 1:30578116/1‑67 (MQ=255) cAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGa < 1:25070950/68‑1 (MQ=255) tCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGaaagttatacgctattgaccattgg < 1:12122045‑M1/68‑26 (MQ=255) ccTGATCGGTGCTGACACGCGTAACGATGCCACCCGCGGCGGTAGAAATCACCAGCGCCGGAATTtgt > 1:7742609/1‑68 (MQ=255) ccTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTtgt > 1:17298559/1‑68 (MQ=255) cTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTtgtg < 1:37165878/68‑1 (MQ=255) gATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc < 1:11415580/68‑1 (MQ=255) gATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc < 1:12415064/68‑1 (MQ=255) gATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc > 1:15233123/1‑68 (MQ=255) gATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc < 1:11944709/68‑1 (MQ=255) aTCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCCCCAGCGCCGGAATTTGTGcc > 1:2174906/1‑67 (MQ=255) aTCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc > 1:32206498/1‑67 (MQ=255) aTCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc > 1:34675570/1‑67 (MQ=255) tCGGTGCTGCCACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca > 1:14393584/1‑67 (MQ=255) tCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca > 1:13947892/1‑67 (MQ=255) gCTGACACGCGTAACGATGACCCCCGCGGCGGaaagttatacgctattgaccattggcgacggtctgg > 1:26222275‑M1/1‑32 (MQ=255) tGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGAcc < 1:3979770/67‑1 (MQ=255) tGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCg > 1:32900243/1‑68 (MQ=255) aacatggcatgagcatgggccaCGCGGCGGTAGAAATCACCCGCGCCGGCATTTGTGCCCCCAGCCCg < 1:24451958‑M1/46‑1 (MQ=255) gACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGt < 1:23535060/68‑1 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAATTCACCAGCGCCGGAATTTGTGCCACCACACCggc > 1:30229178/1‑65 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCCGCGCCGGAATTTGTGCCACCCGCCCGTc > 1:20906965/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:3189950/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:31251713/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:9215141/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:14665135/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:1695709/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:22509798/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:35750573/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:505402/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:1974104/1‑67 (MQ=255) cacGCGTAACGATGACCCCCCCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:1272485/1‑67 (MQ=255) acGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGc < 1:37812473/68‑1 (MQ=255) ggcatgagcatgggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGcc < 1:34827082‑M1/51‑1 (MQ=255) cgcgTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGcc < 1:10292208/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:29888265/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:6250260/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:20137430/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:23017840/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:16094572/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:13033444/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:32527954/68‑1 (MQ=255) aCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGt < 1:3700100/68‑1 (MQ=255) gcatgggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGCCCGTCGCCAATGGTc < 1:33903756‑M1/58‑1 (MQ=255) cGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc > 1:33175885/1‑68 (MQ=255) gATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCa > 1:23869947/1‑68 (MQ=255) gATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCa > 1:22187646/1‑68 (MQ=255) aTGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCaa > 1:18174751/1‑68 (MQ=255) aTGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCaa > 1:11084326/1‑68 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAAt > 1:18976385/1‑68 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAAt < 1:26732459/68‑1 (MQ=255) ggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCtata < 1:36530683‑M1/62‑1 (MQ=255) gacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:11585161‑M1/64‑1 (MQ=255) cccccGCGGCGGaaagttatacgctattgcccattggcgacggtctggtggcacaaattccggcgctg > 1:19943320‑M1/1‑12 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:16685735/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:10038558/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:28995046/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:17781166/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:553530/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc > 1:26936158/1‑68 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc > 1:27230785/1‑68 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:28191360/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:31372203/68‑1 (MQ=255) acaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAAATGTCAATAGCg < 1:4649029‑M1/65‑1 (MQ=255) cccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCACTAGCGt < 1:8741876/68‑1 (MQ=255) cccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGt < 1:19086347/68‑1 (MQ=255) cccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGt > 1:3884063/1‑68 (MQ=255) cccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGt < 1:20433863/68‑1 (MQ=255) cccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGt < 1:7211277/68‑1 (MQ=255) cccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGt < 1:28055476/68‑1 (MQ=255) cgcgGCGGaaagttatacgctattgaccattggcgacggtctggtggcacaaattccggcgctggtga < 1:19288869‑M1/68‑61 (MQ=255) cgcgGCGGaaagttatacgctattgaccattggcgacgggctggtggcacaaattccggcgctggtga < 1:37501796‑M1/68‑61 (MQ=255) | TGAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTAT > CP009273/1958449‑1958583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |