| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2402956 = | NA (NA) | 6 (0.010) | 5/96 | NT | NA | intergenic (+16/+43) | yfbR/yfbS | 5'‑nucleotidase/putative transporter |
| ? | CP009273 | 2402987 = | NA (NA) | noncoding (13/19 nt) | REP168 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP168 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 468 total aligned reads displayed.
TCCCAGCTTCCATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATC > CP009273/2402889‑2403023 | tCCCAGCTTCCATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCg > 1:1958778/1‑68 (MQ=255)tCCCAGCTTCCATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCg < 1:28687178/68‑1 (MQ=255) cccAGCTTCCATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCg > 1:29947232/1‑67 (MQ=255) attatcgtgatggcggtttgtgtggtgatgatcccgatgctgtttccgttttgacaagagcctgatg < 1:3469157‑M1/1‑1 (MQ=255) attatcgtgatggcggtttgtgtggtgatgatcccgatgctgtttccgttttgacaagagcctgatg < 1:14446397‑M1/1‑1 (MQ=255) attatcgtgatggcggtttgtgtggtgatgatcccgatgctgtttccgttttgacaagagcctgatg < 1:8967783‑M1/1‑1 (MQ=255) attatcgtgatggcggtttgtgtggtgatgatcccgatgctgtttccgttttgacaagagcctgatGt > 1:8635432‑M1/67‑68 (MQ=255) attatcgtgatggcggtttgtgtggtgatgatcccgatgatgtttccgttttgaaaagagcctgatg < 1:36864249‑M1/1‑1 (MQ=255) ttatcgtgatggcggtttgtgtggtgatgatcccgatgctgtttccgttttgacaagagcctgatGTc < 1:33066162‑M1/3‑1 (MQ=255) atcgtgatggcggtttgtgtggtgatgatcccgatgctgtttccgttttgacaagagcctgatGTCGc < 1:39122663‑M1/5‑1 (MQ=255) atcgtgatggcggtttgtgtggtgatgatcccgatgctgtttccgttttgacaagagcctgatGTCGc < 1:26683512‑M1/5‑1 (MQ=255) cgtgatggcggtttgtgtggtgatgatcccgatgctgtttccgttttgacaagagcctgatGTCGCa < 1:21112082‑M1/6‑1 (MQ=255) cgtgatggcggtttgtgtggtgatgatcccgatgctgtttccgttttgacaagagcctgatGTCGCa < 1:25703385‑M1/6‑1 (MQ=255) cgtgatggcggtttgtgtggtgatgatcccgatgctgtttccgttttgacaagagcctgatGTCGCa < 1:35398414‑M1/6‑1 (MQ=255) cgtgatggcggtttgtgtggtgatgatcccgatgctgtttccgttttgacaagagcctgatGTCGCa < 1:19929671‑M1/6‑1 (MQ=255) cTTCCATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCa > 1:3227044/1‑67 (MQ=255) ttCCATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGc < 1:13341042/65‑1 (MQ=255) ttCCATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCa < 1:20114599/66‑1 (MQ=255) ttCCATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCa < 1:31570502/66‑1 (MQ=255) cgtgatggcggtttgtgtggtgatgatcccgatgctgtttccgttttgacaagagcctatGTCGCAt < 1:38810742‑M1/7‑1 (MQ=255) cATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAgg < 1:949788/68‑1 (MQ=255) cATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAgg < 1:23028272/68‑1 (MQ=255) cATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAgg < 1:5997650/68‑1 (MQ=255) cATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAgg < 1:31796496/68‑1 (MQ=255) cATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAgg < 1:9864961/68‑1 (MQ=255) cATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAgg < 1:8078976/68‑1 (MQ=255) cATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAgg < 1:36227624/68‑1 (MQ=255) cATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAgg < 1:5413341/68‑1 (MQ=255) cATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAgg < 1:19272156/68‑1 (MQ=255) cATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAgg < 1:10250024/68‑1 (MQ=255) cATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAgg < 1:12130591/68‑1 (MQ=255) tCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCa > 1:20578779/1‑68 (MQ=255) tCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCa > 1:34366967/1‑68 (MQ=255) cTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCaa > 1:13645080/1‑68 (MQ=255) cTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCaa > 1:8307134/1‑68 (MQ=255) cTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCaa > 1:29572852/1‑68 (MQ=255) tttCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAAt < 1:1891559/68‑1 (MQ=255) ttCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATa > 1:35863001/1‑68 (MQ=255) ttCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATa > 1:36517394/1‑68 (MQ=255) ttCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATa > 1:17376889/1‑68 (MQ=255) gCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAgc < 1:32564866/68‑1 (MQ=255) gCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAgc > 1:22143017/1‑68 (MQ=255) gCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAgc < 1:21768928/68‑1 (MQ=255) tCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAgcg < 1:18516444/67‑1 (MQ=255) tCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAgcg > 1:11137295/1‑67 (MQ=255) gagaTTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCCGGCAATAAGCGCCg > 1:7427082/1‑65 (MQ=255) gagaTTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGAt < 1:15431730/68‑1 (MQ=255) gagaTTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGAt < 1:30810929/68‑1 (MQ=255) gaTTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATg < 1:35100282/67‑1 (MQ=255) aTTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCg > 1:34934091/1‑68 (MQ=255) tAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGAc < 1:27927332/68‑1 (MQ=255) tAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGAc < 1:29173128/68‑1 (MQ=255) tAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGAc < 1:5254259/68‑1 (MQ=255) aGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACa < 1:17925064/68‑1 (MQ=255) ccAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATc > 1:38152853/1‑68 (MQ=255) ccAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATc > 1:11322259/1‑68 (MQ=255) ccAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATc > 1:10012319/1‑68 (MQ=255) ccAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATc > 1:23488660/1‑68 (MQ=255) cAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCa > 1:7089447/1‑68 (MQ=255) cAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCa > 1:25136405/1‑68 (MQ=255) cAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCa > 1:34188435/1‑68 (MQ=255) aTTCAGCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATTCGACATCAGGc > 1:8532801/1‑67 (MQ=255) aTTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAg > 1:7320872/1‑65 (MQ=255) aTTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGc > 1:21378866/1‑67 (MQ=255) aTTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGc < 1:2843480/67‑1 (MQ=255) ttCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGct < 1:26965487/67‑1 (MQ=255) aCCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTg < 1:27629426/68‑1 (MQ=255) aCCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTg < 1:12300895/68‑1 (MQ=255) aCCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTg < 1:16231958/68‑1 (MQ=255) ttccgttttgtcaagagcctgatGTCGCATCAGGCAATTAGCGCCGGTTGCGACATCCGGCTCTTGTc < 1:15036884‑M1/45‑1 (MQ=255) gCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCa > 1:33212058/1‑68 (MQ=255) tGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCaaa > 1:3529875/1‑68 (MQ=255) tGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCaaa > 1:2644904/1‑68 (MQ=255) gcagcCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGa > 1:30899165/1‑68 (MQ=255) gcagcCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGa > 1:15220899/1‑68 (MQ=255) gcagcCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGa > 1:24492330/1‑68 (MQ=255) gcagcCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGa > 1:38455066/1‑68 (MQ=255) cagcCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGaa > 1:7549252/1‑68 (MQ=255) cagcCGGAGTCTGCGTCGCATCAGCCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGaa > 1:4223066/1‑68 (MQ=255) gcCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTGTTGTCAAAACGGaaaa > 1:14091586/1‑67 (MQ=255) cGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAg < 1:28813099/68‑1 (MQ=255) ggAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGc < 1:12769162/68‑1 (MQ=255) ggAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGc < 1:10753691/68‑1 (MQ=255) ggAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGc < 1:4965812/68‑1 (MQ=255) ggAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGc < 1:2190426/68‑1 (MQ=255) aGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCa > 1:1255070/1‑67 (MQ=255) aGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCa < 1:11896228/67‑1 (MQ=255) gTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCAt < 1:16076078/67‑1 (MQ=255) gTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCAt < 1:22401274/67‑1 (MQ=255) tCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCg > 1:32923540/1‑68 (MQ=255) tCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCg > 1:19401927/1‑68 (MQ=255) ctacGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCgg < 1:14689728/65‑1 (MQ=255) cTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCgg < 1:27066665/68‑1 (MQ=255) cTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCgg < 1:16806132/68‑1 (MQ=255) gCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGa < 1:25317808/68‑1 (MQ=255) gCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGa < 1:33631662/68‑1 (MQ=255) gCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGa < 1:30318479/68‑1 (MQ=255) GTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGatc < 1:37712399‑M1/68‑1 (MQ=255) GTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGatc > 1:9738416‑M1/1‑68 (MQ=255) GTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGat > 1:4558499‑M1/1‑67 (MQ=255) | TCCCAGCTTCCATCTTTCGCTCGATGAGATTAGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATC > CP009273/2402889‑2403023 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |