| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2402956 = | NA (NA) | 6 (0.010) | 5/96 | NT | NA | intergenic (+16/+43) | yfbR/yfbS | 5'‑nucleotidase/putative transporter |
| ? | CP009273 | 2402987 = | NA (NA) | noncoding (13/19 nt) | REP168 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP168 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 479 total aligned reads displayed.
AGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACGATAATGG > CP009273/2402920‑2403054 | aGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACa < 1:17925064/68‑1 (MQ=255) ccAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATc > 1:10012319/1‑68 (MQ=255) ccAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATc > 1:11322259/1‑68 (MQ=255) ccAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATc > 1:35019579/1‑68 (MQ=255) ccAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATc > 1:5156404/1‑68 (MQ=255) ccAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATc > 1:26779057/1‑68 (MQ=255) ccAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCCCCGGATGCGACATc > 1:17198488/1‑68 (MQ=255) ccAGGATTAACCGCTGTAAGCACCCGCATTCTGCCACGCAACAGGGTATAACATCCGGATGCGACaac > 1:35216761/1‑66 (MQ=255) cAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACAt < 1:6713656/66‑1 (MQ=255) cAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCa > 1:27820125/1‑68 (MQ=255) aTTCAGCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATTCGACATCAGGc > 1:8532801/1‑67 (MQ=255) aTTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAgg < 1:36257286/66‑1 (MQ=255) aTTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAg > 1:7320872/1‑65 (MQ=255) aTTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAg < 1:13294698/65‑1 (MQ=255) aTTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGc > 1:21213839/1‑67 (MQ=255) aTTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGc > 1:3435909/1‑67 (MQ=255) aTTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGc > 1:22023559/1‑67 (MQ=255) aTTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGc > 1:34553335/1‑67 (MQ=255) aTTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAACCGCCGGATGCGACATCAGGc > 1:491474/1‑67 (MQ=255) aTTCACCGCTGTAAGCAGCCGGAGGCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGc < 1:33378224/67‑1 (MQ=255) aTTCACCGCGGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGc > 1:7487965/1‑67 (MQ=255) cACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCtt < 1:32572746/68‑1 (MQ=255) gtttccgttttgacaagagcctgatgtcgcatccggcgcttattgcctgatgcgacATCAGGCTCTTg < 1:38770967‑M2/12‑1 (MQ=255) aCCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTg < 1:8821577/68‑1 (MQ=255) aCCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTg < 1:35927169/68‑1 (MQ=255) aCCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTg < 1:33686609/68‑1 (MQ=255) aCCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTg > 1:19703065/1‑68 (MQ=255) ccGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTg > 1:34213251/1‑67 (MQ=255) ccGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTg > 1:9616959/1‑67 (MQ=255) cGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTc < 1:23295954/68‑1 (MQ=255) gCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCa > 1:19518831/1‑68 (MQ=255) aaGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACg > 1:2999652/1‑68 (MQ=255) aaGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACg > 1:27431028/1‑68 (MQ=255) aaGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACg < 1:28590167/68‑1 (MQ=255) gcagcCGGAGTCTGCGTCGCATCTGGCAATTAGCGCCGGAGGCGACATCAGGCTCTTGTCAAAACGGa > 1:22357667/1‑68 (MQ=255) gcagcCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGa > 1:5397545/1‑68 (MQ=255) gcagcCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGa > 1:38455066/1‑68 (MQ=255) agcCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGa < 1:38137879/66‑1 (MQ=255) cGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGaaa < 1:21616138/65‑1 (MQ=255) cGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACa > 1:18816955/1‑67 (MQ=255) cGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACa > 1:33117073/1‑67 (MQ=255) ggAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGc < 1:7966648/68‑1 (MQ=255) ggAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGc < 1:12769162/68‑1 (MQ=255) aGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCa < 1:31498268/67‑1 (MQ=255) aGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCa > 1:1255070/1‑67 (MQ=255) aGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCa > 1:1095208/1‑67 (MQ=255) gTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCAt < 1:3728137/67‑1 (MQ=255) gTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCAt < 1:16076078/67‑1 (MQ=255) gTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCAt < 1:38918162/67‑1 (MQ=255) gTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCAt < 1:28949995/67‑1 (MQ=255) tCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGGGCGTGTCAAAACGGAAACCGCATCg > 1:23968995/1‑68 (MQ=37) cTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCgg < 1:27066665/68‑1 (MQ=255) cTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCgg < 1:2189398/68‑1 (MQ=255) gCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGa < 1:31767366/68‑1 (MQ=255) gCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGa < 1:7178513/68‑1 (MQ=255) gCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGa < 1:25317808/68‑1 (MQ=255) gCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGa < 1:1831713/68‑1 (MQ=255) tGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGa < 1:30876345‑M1/66‑1 (MQ=255) cGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGa > 1:32332853/1‑67 (MQ=255) GTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGatc < 1:37712399‑M1/68‑1 (MQ=255) GTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGatc > 1:9738416‑M1/1‑68 (MQ=255) TCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGatca < 1:8321891‑M1/68‑1 (MQ=255) TCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGatca < 1:13836061‑M1/68‑1 (MQ=255) CGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGatca > 1:4471162‑M1/1‑67 (MQ=255) GCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGatcatc > 1:11673751‑M1/1‑68 (MQ=255) GCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGatcatc > 1:19192194‑M1/1‑68 (MQ=255) GCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGatcatc > 1:22843018‑M1/1‑68 (MQ=255) GCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGatcatc > 1:26181215‑M1/1‑68 (MQ=255) GCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGatcatc > 1:30309465‑M1/1‑68 (MQ=255) GCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGatcatc > 1:28728617‑M1/1‑68 (MQ=255) GCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGatcat < 1:14641166‑M1/67‑1 (MQ=255) ATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGAtcatca < 1:12304554‑M1/67‑1 (MQ=255) ATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGAtcatca > 1:15188085‑M1/1‑67 (MQ=255) TCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATcacc > 1:26477916‑M1/1‑68 (MQ=255) CAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATcacca > 1:12027042‑M1/1‑68 (MQ=255) CAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATcacca > 1:31050561‑M1/1‑68 (MQ=255) gCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACcacac > 1:20815795/1‑68 (MQ=255) cAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATcaccac < 1:9306332/65‑1 (MQ=255) aGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAAcc > 1:16798133/1‑67 (MQ=255) aGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAAcc > 1:12201952/1‑67 (MQ=255) aGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCg < 1:20039011/68‑1 (MQ=255) aGCGCCGGATGCGACATCAGGCACTTGTCAAAACGGACACACCATCGGGATGATCAACACACaacac > 1:10409779/1‑64 (MQ=255) cGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCAt < 1:16319618/67‑1 (MQ=255) ggATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCa < 1:24829321/68‑1 (MQ=255) tgcgacATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACg < 1:36834393‑M2/61‑1 (MQ=255) tgcgacATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACg < 1:25703385‑M2/61‑1 (MQ=255) tgcgacATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACg < 1:28360660‑M2/61‑1 (MQ=255) tgcgacATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACg < 1:35398414‑M2/61‑1 (MQ=255) gcgacATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACGAt < 1:14139770‑M2/63‑1 (MQ=255) cgacATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGCTCATCACCACACAAACCGCCATCACGATa > 1:19380897‑M2/5‑68 (MQ=255) acATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACGATAAt > 1:8635432‑M2/3‑68 (MQ=255) cATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACGATAAt < 1:29251336‑M2/66‑1 (MQ=255) cATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACGATAAt < 1:32927389‑M2/66‑1 (MQ=255) cATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACGATAAt < 1:4120620‑M2/66‑1 (MQ=255) aTCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACGATAATgg < 1:5992862/68‑1 (MQ=255) aTCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACGATAATgg < 1:25126360/68‑1 (MQ=255) aTCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACGATAATgg < 1:20328101/68‑1 (MQ=255) aTCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACGATAATgg < 1:1557421/68‑1 (MQ=255) aTCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACGATAATgg < 1:15030855/68‑1 (MQ=255) aTCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACGATAATgg > 1:10683155/1‑68 (MQ=255) | AGCCAGGATTCACCGCTGTAAGCAGCCGGAGTCTGCGTCGCATCAGGCAATAAGCGCCGGATGCGACATCAGGCTCTTGTCAAAACGGAAACAGCATCGGGATCATCACCACACAAACCGCCATCACGATAATGG > CP009273/2402920‑2403054 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |