| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2694210 = | 310 (0.660) | 12 (0.030) | 8/90 | NT | 5.6% | coding (148/381 nt) | acpS | holo‑[acyl‑carrier‑protein] synthase 1 |
| ? | CP009273 | 2694239 = | 159 (0.420) | coding (119/381 nt) | acpS | holo‑[acyl‑carrier‑protein] synthase 1 | |||||
Only 100 of 441 total aligned reads displayed.
GACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTG > CP009273/2694144‑2694275 | ggtgatcgcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgg > 1:37364353‑M1/67‑67 (MQ=255)ggtgatcgcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgg > 1:2197232‑M1/67‑67 (MQ=255)ggtgatcgcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGa < 1:30107050‑M1/2‑1 (MQ=255)ggtgatcgcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGa < 1:18154004‑M1/2‑1 (MQ=255)ggtgatcgcccgatccggtgatcgcctggcacgccgagtattaagcgataacgaatgggctatctgGa < 1:38148590‑M1/2‑1 (MQ=255) aCCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaa > 1:605304/1‑68 (MQ=255) aCCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaa > 1:20782581/1‑68 (MQ=255) aCCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaa > 1:34129576/1‑68 (MQ=255) tgatcgcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGaa > 1:4735290‑M1/65‑67 (MQ=255) ccATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaaa > 1:7077215/1‑68 (MQ=255) ccATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaaa > 1:27631835/1‑68 (MQ=255) ccATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaaa > 1:24136178/1‑68 (MQ=255) ccATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaaa < 1:29883026/68‑1 (MQ=255) gatcgcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGaaa < 1:5812182‑M1/4‑1 (MQ=255) aTTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAAc > 1:13830135/1‑68 (MQ=255) aTTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAAc > 1:31789911/1‑68 (MQ=255) tcgcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACg > 1:35574337‑M1/62‑68 (MQ=255) tcgcccgatccggggatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAAc > 1:19272843‑M1/62‑67 (MQ=255) gcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGc < 1:36203546‑M1/8‑1 (MQ=255) gCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGc > 1:15035077/1‑67 (MQ=255) gCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGc > 1:9670283/1‑67 (MQ=255) gCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGc > 1:14630955/1‑67 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:34776182‑M1/9‑1 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:21564701‑M1/9‑1 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:20447983‑M1/9‑1 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:32472165‑M1/9‑1 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:16269128‑M1/9‑1 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:7629340‑M1/9‑1 (MQ=255) ggATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAGCGCAcc > 1:25913255/1‑68 (MQ=255) ggATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCAcc < 1:22540921/68‑1 (MQ=255) ggATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCAcc > 1:3310823/1‑68 (MQ=255) ccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCAcc > 1:38741583‑M1/58‑68 (MQ=255) aTCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCg > 1:30773547/1‑67 (MQ=255) aTCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCg > 1:31261407/1‑67 (MQ=255) tCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACATCAAAACGCTTCGCCAGAAAACGCACCgg < 1:37723462/67‑1 (MQ=255) tCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCgg < 1:20070637/67‑1 (MQ=255) tCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCgg < 1:27255394/67‑1 (MQ=255) tCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCg > 1:3378069/1‑66 (MQ=255) cccGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCt < 1:4148650/68‑1 (MQ=255) ccGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCtg > 1:9400899/1‑68 (MQ=255) ccGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCtg > 1:7304902/1‑68 (MQ=255) cGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCtgg < 1:11147452/68‑1 (MQ=255) ggTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCtggt < 1:35212305/68‑1 (MQ=255) gCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTggtggt > 1:36142313/1‑68 (MQ=255) gCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTggtggt > 1:33971037/1‑68 (MQ=255) aaCGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGt < 1:10563384/68‑1 (MQ=255) aCGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGtt < 1:10034309/68‑1 (MQ=255) aCGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGtt > 1:39022771/1‑68 (MQ=255) cGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt < 1:26602204/68‑1 (MQ=255) cGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt < 1:11215935/68‑1 (MQ=255) cGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt < 1:6350882/68‑1 (MQ=255) cGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt < 1:22310520/68‑1 (MQ=255) cGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt < 1:23445304/68‑1 (MQ=255) cGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt < 1:25211885/68‑1 (MQ=255) cGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGGGGTGCGttt < 1:30465714/68‑1 (MQ=255) gCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt > 1:31056523/1‑67 (MQ=255) ttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAg < 1:27977150/68‑1 (MQ=255) gctgcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGAt > 1:24510840/1‑68 (MQ=255) gctgcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGAt < 1:8076866/68‑1 (MQ=255) tgcGGCTTCTTTCACAGCAACACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATa > 1:21088715/1‑67 (MQ=255) tgcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATa > 1:400127/1‑67 (MQ=255) gcgtattaagcgataacgaatgggctatctgGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc > 1:13588794‑M1/32‑68 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:18866101/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:16666925/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:33302497/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:15276179/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCGGGTGGTGCGTTTTCCAGATAGc < 1:11714255/68‑1 (MQ=255) ggCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGcc < 1:1421312/67‑1 (MQ=255) cttcttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCAt > 1:37138085/1‑68 (MQ=255) ttctttctCAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCAt < 1:8820209/67‑1 (MQ=255) ttcttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCAt < 1:12062903/67‑1 (MQ=255) ttcttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCAt < 1:28977138/67‑1 (MQ=255) tcttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTc < 1:2631481/68‑1 (MQ=255) cttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCg < 1:19719808/68‑1 (MQ=255) tttCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGTTGGTGCGTTTTCCAGATAGCCCATTCGt < 1:11337036/68‑1 (MQ=255) ttCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGtt < 1:9761178/68‑1 (MQ=255) ttCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGtt < 1:17098020/68‑1 (MQ=255) ttCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGtt < 1:17727299/68‑1 (MQ=255) gcgataacgaatgggctatctgGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGtt < 1:23117027‑M1/46‑1 (MQ=255) tCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTa > 1:10401936/1‑68 (MQ=255) tCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTa > 1:12643900/1‑68 (MQ=255) acaGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATc > 1:24786554/1‑68 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCg < 1:36602735/64‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCg < 1:36863744/64‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCg < 1:37546371/64‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:18391063/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:13265973/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:8391767/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:15651658/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:24008155/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCtt < 1:533637/67‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCt < 1:22085358/66‑1 (MQ=255) aaaCGCTGCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTaa < 1:19431461/68‑1 (MQ=255) gCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATAc > 1:25462506/1‑67 (MQ=255) gCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATAc > 1:15427863/1‑67 (MQ=255) gCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATAc > 1:38566588/1‑67 (MQ=255) gctatctgGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATAcgc < 1:22940674‑M1/60‑1 (MQ=255) cAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGt < 1:32911324/67‑1 (MQ=255) cAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTAATCGCTAAATACGCGGCGt < 1:29599628/67‑1 (MQ=255) gGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTg < 1:28558315‑M1/66‑1 (MQ=255) | GACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTG > CP009273/2694144‑2694275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |