| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2943957 = | NA (NA) | 4 (0.010) | 3/92 | NT | NA | intergenic (+25/+37) | argA/recD | fused acetylglutamate kinase homolog (inactive)/amino acid N‑acetyltransferase/exonuclease V (RecBCD complex), alpha chain |
| ? | CP009273 | 2943974 = | NA (NA) | noncoding (3/14 nt) | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 471 total aligned reads displayed.
TACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGA > CP009273/2943891‑2944024 | tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt < 1:32420334/68‑1 (MQ=255)tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt > 1:22683949/1‑68 (MQ=255)tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt < 1:29801988/68‑1 (MQ=255)tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt > 1:11119290/1‑68 (MQ=255)tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt < 1:11624124/68‑1 (MQ=255)tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt < 1:2512471/68‑1 (MQ=255)tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt > 1:17258628/1‑68 (MQ=255)tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt > 1:7947210/1‑68 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc < 1:20661116/68‑1 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc < 1:37625203/68‑1 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc > 1:5701528/1‑68 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc < 1:36426613/68‑1 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc > 1:10027942/1‑68 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc < 1:30330027/68‑1 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc > 1:12006210/1‑68 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc < 1:11296080/68‑1 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGAATTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc < 1:27632496/68‑1 (MQ=255) cGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTa > 1:4776913/1‑67 (MQ=255) aaaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAacac < 1:17504984/68‑1 (MQ=255) aaaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAaca < 1:14952448/67‑1 (MQ=255) aaaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAaca < 1:26530340/67‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:4715356/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:15414504/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:14278259/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:13789972/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:13140318/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:35954129/68‑1 (MQ=255) tCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCg > 1:22937642/1‑68 (MQ=255) aaGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACg < 1:10562443/68‑1 (MQ=255) aaGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACg < 1:34427125/68‑1 (MQ=255) aGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACg > 1:33576199/1‑67 (MQ=255) aGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACg > 1:22195550/1‑67 (MQ=255) aGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGt < 1:28440560/68‑1 (MQ=255) tgtTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTc > 1:18887053/1‑67 (MQ=255) tggtGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCa < 1:10298601/64‑1 (MQ=255) tGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCa < 1:36612884/67‑1 (MQ=255) tGATGGCGGAATTAGGGTAACCGCGGAACATCGTCGGATGCGACATGCGTAACACGCGTACGTCGCa < 1:1629445/67‑1 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg > 1:35032113/1‑68 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg > 1:32147923/1‑68 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg > 1:24615595/1‑68 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg < 1:35816135/68‑1 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg > 1:33735589/1‑68 (MQ=255) gCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGc > 1:36315904/1‑68 (MQ=255) cGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGc < 1:38333487/67‑1 (MQ=255) cGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGc < 1:12667610/67‑1 (MQ=255) taTTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTTACACTCGTACGTCTCATCCGGCAAt < 1:35315742/67‑1 (MQ=255) aTTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAAt < 1:10901180/67‑1 (MQ=255) aTTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAAt < 1:29612815/67‑1 (MQ=255) ttAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTAc > 1:20429598/1‑68 (MQ=255) ttAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTAc > 1:9026924/1‑68 (MQ=255) tAGGGTAATCTATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCTCATCCGGCAATTACg < 1:23547670/68‑1 (MQ=255) tAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:24012326/68‑1 (MQ=255) tAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:36989802/68‑1 (MQ=255) tAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:5959097/68‑1 (MQ=255) aGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGt < 1:32723011/68‑1 (MQ=255) aGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGt < 1:27026813/68‑1 (MQ=255) aGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGt < 1:18679390/68‑1 (MQ=255) gggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACACGTACGTCGCATCCGGCAATTACGtt > 1:31339962/1‑68 (MQ=255) ggTAAGTGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:7061127/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:28949899/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:34895913/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:19278189/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:34240676/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:28717145/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:16902433/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:25525645/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:26217110/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:31525435/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:16213483/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:8163476/1‑68 (MQ=255) gTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTa > 1:37296759/1‑68 (MQ=255) tAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTAt > 1:33084229/1‑68 (MQ=255) aaGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTAtt < 1:19475508/68‑1 (MQ=255) gCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTc > 1:18364632/1‑67 (MQ=255) cGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTccc > 1:27844412/1‑68 (MQ=255) gATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTcc < 1:27993890/66‑1 (MQ=255) gATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTcc < 1:5279515/66‑1 (MQ=255) acgtaattgccggatgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTg < 1:1285742‑M1/48‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:20028898/68‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:6356950/68‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:15784006/68‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:16537198/68‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:30654146/68‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:17693746/68‑1 (MQ=255) aaTCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACt < 1:38039156/68‑1 (MQ=255) aaTCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACt < 1:12405699/68‑1 (MQ=255) aaTCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACt < 1:22047915/68‑1 (MQ=255) aaTCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACt < 1:2825682/68‑1 (MQ=255) aTCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTa > 1:23674628/1‑68 (MQ=255) tcgtcgGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTaa < 1:24140144/68‑1 (MQ=255) tcgtcgGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTaa < 1:7334568/68‑1 (MQ=255) cggatgcgacATGCGTAACACTCGTACGTCGCCTGCGGCAATTACGTTTATTCCCGTGCACTaaacc < 1:38870993‑M1/57‑2 (MQ=255) cggatgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAaaca < 1:9238512‑M1/57‑1 (MQ=255) tgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgcc > 1:14565882‑M1/7‑68 (MQ=255) tgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgcc > 1:8714972‑M1/7‑68 (MQ=255) tgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTAATCCCGTGAACTAAACAAcgcc < 1:6721109‑M1/62‑1 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgccg > 1:14094391‑M1/6‑68 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgccg > 1:12121277‑M1/6‑68 (MQ=255) gacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTAAACTAAACAACgccgcc > 1:19579950‑M1/4‑68 (MQ=255) aTGCGTAACACTCGTACGTCGCATCCGGCAATTATGTTTATTCCCGTGAACTAAACAACGCCGCCAGa < 1:21254656/68‑1 (MQ=255) | TACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGA > CP009273/2943891‑2944024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |