| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2943957 = | NA (NA) | 4 (0.010) | 3/92 | NT | NA | intergenic (+25/+37) | argA/recD | fused acetylglutamate kinase homolog (inactive)/amino acid N‑acetyltransferase/exonuclease V (RecBCD complex), alpha chain |
| ? | CP009273 | 2943974 = | NA (NA) | noncoding (3/14 nt) | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 610 total aligned reads displayed.
AAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGT > CP009273/2943907‑2944041 | ctggcggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatg < 1:34948244‑M2/1‑1 (MQ=255)aaGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACg < 1:2609108/68‑1 (MQ=255) aGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACg > 1:23379990/1‑67 (MQ=255) aGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACGCGTACg > 1:14816796/1‑67 (MQ=255) ggcggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTc > 1:17652191‑M2/66‑68 (MQ=255) tgtTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTc > 1:36586321/1‑67 (MQ=255) cggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGc > 1:14094391‑M2/64‑68 (MQ=255) cggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGc > 1:33212384‑M2/64‑68 (MQ=255) ggcgttgtttagttcacgggattaaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGCa < 1:6721109‑M2/6‑1 (MQ=255) ggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGCa > 1:22740173‑M2/63‑68 (MQ=255) ggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGCa > 1:7322391‑M2/63‑68 (MQ=255) ggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGCa > 1:27965158‑M2/63‑68 (MQ=255) tGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCa > 1:16217022/1‑67 (MQ=255) tGGCGGATTTAGGGTAAGCGATTAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg < 1:30107549/68‑1 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg < 1:35356798/68‑1 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg > 1:8075963/1‑68 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg > 1:10608093/1‑68 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg > 1:32147923/1‑68 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg < 1:21738741/68‑1 (MQ=255) gCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTATCACTCGTACGTCGCATCCGGc > 1:2489556/1‑68 (MQ=255) gCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGc > 1:17471594/1‑68 (MQ=255) gCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGc > 1:29725207/1‑68 (MQ=255) cGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGc < 1:12667610/67‑1 (MQ=255) aTTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAAt < 1:28701121/67‑1 (MQ=255) tttAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAAtt < 1:10941792/67‑1 (MQ=255) tAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:36989802/68‑1 (MQ=255) aGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGt < 1:4902445/68‑1 (MQ=255) gggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGtt > 1:32860709/1‑68 (MQ=255) gggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACACGTACGTCGCATCCGGCAATTACGtt > 1:31339962/1‑68 (MQ=255) ggTAAGTGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:7061127/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:36329958/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:6408334/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:34646898/1‑68 (MQ=255) gTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTa > 1:37296759/1‑68 (MQ=255) tAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTAt > 1:37974916/1‑68 (MQ=255) aaGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTAtt < 1:19475508/68‑1 (MQ=255) aaGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTAt < 1:35824665/67‑1 (MQ=255) ataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGCATCCGGCAATTACGTTTATTcc < 1:20178010‑M2/27‑1 (MQ=255) cGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTccc > 1:27844412/1‑68 (MQ=255) acgtaattgccggatgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTg < 1:24130478‑M1/48‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:18545387/68‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:9222603/68‑1 (MQ=255) aaTCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACt < 1:12405699/68‑1 (MQ=255) aaTCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACt < 1:22047915/68‑1 (MQ=255) aTCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTa > 1:23674628/1‑68 (MQ=255) cggatgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAaaca > 1:18862934‑M1/11‑67 (MQ=255) tgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgcc > 1:8714972‑M1/7‑68 (MQ=255) tgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgcc > 1:14565882‑M1/7‑68 (MQ=255) tgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgcc > 1:14367527‑M1/7‑68 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgccg > 1:27658057‑M1/6‑68 (MQ=255) gacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACgccgcc > 1:16682248‑M1/4‑68 (MQ=255) cATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAg < 1:33641911‑M1/67‑1 (MQ=255) cATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAg > 1:16978697‑M1/2‑68 (MQ=255) aTGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAg > 1:20434514/1‑67 (MQ=255) tGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGa > 1:34348788/1‑67 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc < 1:30390471/68‑1 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc > 1:32346171/1‑68 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc < 1:27328926/68‑1 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc < 1:29229046/68‑1 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc < 1:22274326/68‑1 (MQ=255) cGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc > 1:5690031/1‑67 (MQ=255) gTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc > 1:23938207/1‑66 (MQ=255) tAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc > 1:1643133/1‑65 (MQ=255) acacTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgc < 1:11759556/68‑1 (MQ=255) acacTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgc < 1:5147267/68‑1 (MQ=255) acacTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgc < 1:19146333/68‑1 (MQ=255) acacTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgc > 1:21035047/1‑68 (MQ=255) acacTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgc < 1:25178552/68‑1 (MQ=255) acacTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgc > 1:33898350/1‑68 (MQ=255) cacTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgc > 1:7767954/1‑67 (MQ=255) acTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgcg > 1:16111549/1‑67 (MQ=255) acTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgcg > 1:13209866/1‑67 (MQ=255) acTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgcg > 1:31553827/1‑67 (MQ=255) aatCGTACGTCCCATCAGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgcg > 1:36101489/3‑67 (MQ=255) cTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgcc > 1:10341507/1‑68 (MQ=255) tgTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:38518303/67‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:24321460/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:28142849/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:12095123/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:12918545/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:30870360/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:4578245/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:3756741/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:1378890/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:29531997/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:25499369/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:32445499/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgcc > 1:38811960/1‑66 (MQ=255) tACGTCGCATCCGGCAATTACTTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTc > 1:6027230/1‑68 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa < 1:413331/68‑1 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa > 1:11629383/1‑68 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa > 1:10102800/1‑68 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa < 1:26680864/68‑1 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa < 1:1218242/68‑1 (MQ=255) cGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa < 1:13340668/67‑1 (MQ=255) GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGt > 1:1963284‑M2/1‑68 (MQ=255) GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGt > 1:28336936‑M2/1‑68 (MQ=255) GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGt > 1:15443716‑M2/1‑68 (MQ=255) GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGt < 1:11228062‑M2/68‑1 (MQ=255) GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGt < 1:22462356‑M2/68‑1 (MQ=255) | AAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGT > CP009273/2943907‑2944041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |