| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3063441 | NA (NA) | 4 (0.010) | 4/98 | NT | NA | noncoding (80/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3063452 | NA (NA) | noncoding (91/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 867 total aligned reads displayed.
GAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAA > CP009273/3063376‑3063508 | gAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATa < 1:16426712/67‑1 (MQ=255) aCGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGc < 1:21139183/68‑1 (MQ=255) aCGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGc < 1:12160050/68‑1 (MQ=255) aCGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGc < 1:27024439/68‑1 (MQ=255) cGCCTTATCCGGCCTACAAAACCCTGCAAATTCATTATATTGCAGGATACGTGTAGGCCTGATAAGCg > 1:30190168/1‑68 (MQ=255) cGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCg > 1:38868623/1‑68 (MQ=255) cGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCg > 1:35351497/1‑68 (MQ=255) ccTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTa > 1:37243647/1‑68 (MQ=255) ccTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTa > 1:23226492/1‑68 (MQ=255) aTCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAgcgc < 1:4177181/68‑1 (MQ=255) aTCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAgcgc < 1:23658850/68‑1 (MQ=255) tCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCa < 1:15171191‑M2/68‑2 (MQ=255) ccGGCCTACAAAAACCTGCAATTTCAATTTATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCa < 1:18207122‑M2/67‑2 (MQ=255) ccGGCCTACAAAAACCTGCAAATTCATTATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCa < 1:1037420‑M2/67‑2 (MQ=255) ccGGCCTACAAAAACCTGCAAATTCAAGATATTGCAGGATACGTGTCGGCCTGATAAGCGTTGCGCa < 1:2633660‑M2/67‑2 (MQ=255) cGGCCTACAAAAACGTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCatc < 1:35112328‑M2/68‑4 (MQ=255) cGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCg > 1:8578110/1‑59 (MQ=255) cGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGAGACGTGTAGGCCTGATAAGCGGCGCGCatc < 1:15572623‑M2/68‑4 (MQ=255) gCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCatcag < 1:28197874‑M2/68‑6 (MQ=255) ccTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCatcag > 1:26070253‑M2/1‑62 (MQ=255) cTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCatcaggc > 1:38416242‑M2/1‑61 (MQ=255) cAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt < 1:2248064/68‑1 (MQ=255) aaaaCCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:34838108/1‑68 (MQ=255) aaaaCCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:7490797/1‑68 (MQ=255) aaCCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt > 1:19120913/1‑67 (MQ=255) aCCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt > 1:9151732/1‑66 (MQ=255) ccTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCt > 1:10794827/1‑68 (MQ=255) cAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTg > 1:29853679/1‑68 (MQ=255) aaaTTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTg > 1:30473721/1‑67 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:31008705/1‑68 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:25163727/1‑68 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:32218443/1‑68 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:12975575/1‑68 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:12475134/1‑68 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:13720710/1‑68 (MQ=255) tGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAcc < 1:16743790/68‑1 (MQ=255) gCAGGATTCGTGTATGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAccc < 1:10033746/68‑1 (MQ=255) gCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAccc > 1:770610/1‑68 (MQ=255) gCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAccc > 1:16937735/1‑68 (MQ=255) gCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAccc > 1:25567085/1‑68 (MQ=255) gCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAccc > 1:27639323/1‑68 (MQ=255) gCAGGATACGAGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTATCCTTTTGGCGAAAAAAAGAccc > 1:14084077/1‑68 (MQ=21) aGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGc > 1:16057933/1‑68 (MQ=255) aGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGc > 1:18949157/1‑68 (MQ=255) aGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGc > 1:24366952/1‑68 (MQ=255) aGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGc > 1:17935707/1‑68 (MQ=255) aGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGc > 1:32830790/1‑68 (MQ=255) gATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCag > 1:20244154/1‑68 (MQ=255) aTACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCaga > 1:34290270/1‑68 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:31155253/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:13331253/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:37532957/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:37870097/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:19436016/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:11730887/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:5360876/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAACCGCAGAGCgg > 1:38556119/1‑67 (MQ=255) gtAGGCGTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCggg < 1:8819411/67‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCggg < 1:8360690/67‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGc < 1:6930585/68‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGc < 1:326793/68‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGc < 1:17250575/68‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGc < 1:31645799/68‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGc < 1:21667217/68‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGc < 1:15719570/68‑1 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCggg > 1:33404610/1‑66 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGc < 1:279068/67‑1 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTg > 1:29269893/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTg > 1:36445783/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTg > 1:22644191/1‑68 (MQ=255) ccTGCTAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCGTTga > 1:18651050/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCTATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:36086680/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:20624568/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:24842684/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:24656512/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:11063900/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:22890177/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:6698029/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:36776278/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:22280278/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCACGCAATTTTGCTTTTGGCGAAAAAAAGACCCGAAGAGCGGGCCTTga > 1:29923625/1‑68 (MQ=25) cTGATgcgctacgcttatcaggcctacacgtatcctgcaatatattgaatttgcaggtttttgtaggc < 1:14824910‑M1/68‑64 (MQ=255) cTGATgcgctacgcttatcaggcctacacgtatcctgcaatatattgaatttgcaggtttttgtagg > 1:3815898‑M1/1‑5 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga < 1:8069556/67‑1 (MQ=255) tGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTgaga < 1:3405253/68‑1 (MQ=255) tGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTgaga < 1:9577693/68‑1 (MQ=255) tGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTgaga < 1:5888015/68‑1 (MQ=255) gATgcgctacgcttatcaggcctacacgtatcctgcaatatattgaatttgcaggtttttgtaggccg < 1:17681336‑M1/68‑66 (MQ=255) gATgcgctacgcttatcaggcctacacgtatcctgcaatatattgaatttgcaggtttttgtaggccg < 1:2957138‑M1/68‑66 (MQ=255) tgcgctactcttatcagtcctacacgtatcctgcaatatattgaatttgcaggtttttgtaggccgg < 1:30646431‑M1/67‑67 (MQ=255) tgcgctacgcttatgtggccttgacgtatcctggaatattttgaatttgcaggtttttgtaggccgga < 1:31969800‑M1/68‑68 (MQ=255) tgcgctacgcttatcaggcctacacgtatcctgcaatatattgaatttgcaggtttttgtaggccgga < 1:33853826‑M1/68‑68 (MQ=255) tgcgctacgcttatcaggcctacacgtatcctgcaatatattgaatttgcaggtttttgtaggccgga < 1:21374317‑M1/68‑68 (MQ=255) tgcgctacgcttatcaggcctacacgtatcctgcaatatattgaatttgcaggtttttgtaggccgg < 1:4499514‑M1/67‑67 (MQ=255) tAAGCGTAGCGCatcaggcctacacgtatcctgcaatatattgaatttgcaggtttttgtaggccgg > 1:5164868‑M2/1‑12 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATaa > 1:3567994/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATaa > 1:28954694/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATaa < 1:28688744/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATaa > 1:26647214/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATaa > 1:19848539/1‑68 (MQ=255) | GAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAA > CP009273/3063376‑3063508 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |