| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3063441 | NA (NA) | 4 (0.010) | 4/98 | NT | NA | noncoding (80/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3063452 | NA (NA) | noncoding (91/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 947 total aligned reads displayed.
ATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAA > CP009273/3063385‑3063519 | aTCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAgcgc < 1:23658850/68‑1 (MQ=255)aTCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAgcgc < 1:4177181/68‑1 (MQ=255) ccGGCCTACAAAAACCTGCAAATTCATTATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCa < 1:1037420‑M2/67‑2 (MQ=255) ccGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCa < 1:29895566‑M2/67‑2 (MQ=255) ccGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCa < 1:30506239‑M2/67‑2 (MQ=255) cGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCatc < 1:17681336‑M2/68‑4 (MQ=255) cGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCatc < 1:16845954‑M2/68‑4 (MQ=255) cGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGAGACGTGTAGGCCTGATAAGCGGCGCGCatc < 1:15572623‑M2/68‑4 (MQ=255) gCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCatcag < 1:24689624‑M2/68‑6 (MQ=255) cAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt < 1:30144996/68‑1 (MQ=255) cAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt < 1:2248064/68‑1 (MQ=255) cAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt < 1:32543304/68‑1 (MQ=255) cAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt < 1:15154688/68‑1 (MQ=255) aaaaCCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:18756910/1‑68 (MQ=255) aaaaCCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:7490797/1‑68 (MQ=255) aaaaCCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:843567/1‑68 (MQ=255) aaCCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt > 1:31829592/1‑67 (MQ=255) aaCCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt > 1:19120913/1‑67 (MQ=255) aCCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt > 1:18542527/1‑66 (MQ=255) ccTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCt > 1:28803241/1‑68 (MQ=255) ccTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCt > 1:26601068/1‑68 (MQ=255) aTTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCg > 1:35925083/1‑68 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:37447819/1‑68 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:20015384/1‑68 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:15907572/1‑68 (MQ=255) tGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAcc < 1:37795517/68‑1 (MQ=255) gCAGGATTCGTGTATGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAccc < 1:10033746/68‑1 (MQ=255) gCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAccc > 1:36734378/1‑68 (MQ=255) gCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAccc > 1:11056228/1‑68 (MQ=255) gCAGGATACGAGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTATCCTTTTGGCGAAAAAAAGAccc > 1:14084077/1‑68 (MQ=21) aGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGc > 1:27731087/1‑68 (MQ=255) aGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGc > 1:7743607/1‑68 (MQ=255) gATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCag > 1:31096261/1‑68 (MQ=255) aTACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCaga > 1:21412521/1‑68 (MQ=255) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGc > 1:3494434/1‑68 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:32081249/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:5360876/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:22656312/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:13331253/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:16461925/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:38940804/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:35584983/1‑67 (MQ=255) gtAGTCCTGATAAGCGTAGCGCATCATGCAATTTTGCTTTTTGCGAAAAAAAGACCCGCAGAGCGGGc < 1:33891937/68‑1 (MQ=21) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCggg < 1:15697507/67‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCggg < 1:33539506/67‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCggg > 1:31443090/1‑67 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGc < 1:6930585/68‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGc < 1:21667217/68‑1 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCggg > 1:28061015/1‑66 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCggg > 1:10727662/1‑66 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGcc < 1:38640897/67‑1 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCt < 1:33136247/68‑1 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTg > 1:26268205/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTg > 1:9609674/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTg > 1:9042005/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTg > 1:4949610/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTg > 1:38453330/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTg > 1:35337158/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:37983855/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:9265489/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:38321924/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:6698029/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:2526942/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:8182140/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:29653887/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:1249089/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:20624568/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:12185948/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:29358614/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:34718285/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACACGCAGAGCGGGCCTTga > 1:11501278/1‑68 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga < 1:21976038/67‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga < 1:37078214/67‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga < 1:14622793/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATaa < 1:34088964/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATaa < 1:32756561/68‑1 (MQ=255) aaGCGTAGCGCAGCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAg < 1:26910460/68‑1 (MQ=255) aGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGc < 1:30833700/68‑1 (MQ=255) aGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGc > 1:25813252/1‑68 (MQ=255) aGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGc < 1:28377347/68‑1 (MQ=255) aGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGc < 1:2290818/68‑1 (MQ=255) aGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGc > 1:25061763/1‑68 (MQ=255) aGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGc < 1:19306951/68‑1 (MQ=255) cGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAg > 1:17336112/1‑68 (MQ=255) gTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAATACCCGCAGAGCGGGCCTTGAGATAAGCAGa < 1:13036458/68‑1 (MQ=255) gTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGa > 1:13764775/1‑68 (MQ=255) gTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGa > 1:19775374/1‑68 (MQ=255) gTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGa < 1:21031146/68‑1 (MQ=255) gTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGa > 1:23846612/1‑68 (MQ=255) tAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGaa > 1:29042508/1‑68 (MQ=255) atcgcATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGaa < 1:4450478/65‑1 (MQ=255) aGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGaaa < 1:8751756/68‑1 (MQ=255) gcgcATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAg > 1:20287100/1‑68 (MQ=255) cgcATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAgg > 1:24467391/1‑68 (MQ=255) gcATGATGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCTGAAAg < 1:17050569/66‑1 (MQ=38) gcATCAGGCAATTTTGGTTTTGGCAAAAAAAAGACCCGCAGAGGGGGCTTTGAGATATGCAGAAAgta > 1:18000621/1‑66 (MQ=255) gcATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAgg < 1:23180784/67‑1 (MQ=255) gcATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAg < 1:36293772/66‑1 (MQ=255) gcATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGa > 1:18247051/1‑68 (MQ=255) gcATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGa < 1:5791921/68‑1 (MQ=255) | ATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAA > CP009273/3063385‑3063519 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |