| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3701790 = | 83 (0.180) | 5 (0.010) +GTTGAGCAGGCG |
4/88 | NT | 6.4% | intergenic (‑725/+186) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701799 = | 103 (0.220) | intergenic (‑734/+177) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
Only 100 of 472 total aligned reads displayed.
GCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGC > CP009273/3701736‑3701866 | gggcagGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCg > 1:1798754‑M2/7‑68 (MQ=255) cgaagtggcgagtaatcctctatcaccgaccaaattcgaaacgcctgctcaacGAGCAggcttttttg > 1:14350693‑M1/54‑65 (MQ=255) GGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTg > 1:10073847‑M2/1‑68 (MQ=255) GAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:10318417‑M2/1‑68 (MQ=255) GAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:28452247‑M2/1‑68 (MQ=255) GAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:23206033‑M2/1‑68 (MQ=255) GAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:30396408‑M2/1‑68 (MQ=255) GAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:6427079‑M2/1‑68 (MQ=255) AGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:34211261‑M2/1‑67 (MQ=255) AGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:38005991‑M2/1‑67 (MQ=255) GGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTc > 1:38421030‑M2/1‑68 (MQ=255) GGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTc > 1:8693265‑M2/1‑68 (MQ=255) GGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTc > 1:31071991‑M2/1‑68 (MQ=255) GTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGTATTTGGTCg > 1:15033852‑M2/1‑68 (MQ=255) GTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCg > 1:946953‑M2/1‑68 (MQ=255) GTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCg > 1:7950103‑M2/1‑68 (MQ=255) ccaatcctctatcaccgaccaacttcgAAAAGCCTCCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt > 1:29428708‑M1/28‑68 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTTCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:28026141‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCgg < 1:17348577‑M2/67‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:24124841‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:23570244‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:24732199‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:10691559‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:29770168‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:2267245‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:37553219‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:37341486‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:21562403‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:2629861‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:13398998‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:19657802‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:19174590‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:3954805‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:18162215‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:32562205‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:500632‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:32248935‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:16230192‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:31991189‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:389507‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:31370772‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:5819650‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGGTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:33793485‑M2/68‑1 (MQ=255) TCTCAGCCTCATGAGCTGCAGATGCAAAACAGCCTGATCGTTGAGAAGGCTTTTCGAATTTGGTCGGt < 1:28884212‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:35512660‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:15863627‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:36319083‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:37859629‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:22316396‑M2/68‑1 (MQ=255) accgaccaaattcgaaaagcctggtcgttgaggaggcgTTTGGATTTTGGGCGGTGATAGTGGATTAc > 1:13760959‑M2/39‑68 (MQ=255) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:29033942/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:30868565/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:3358716/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc < 1:34961456/67‑1 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc < 1:22934309/67‑1 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:16666157/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc < 1:5382732/67‑1 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:15684244/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:14570013/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc < 1:13896769/67‑1 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCGCGTGGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc < 1:6970007/67‑1 (MQ=255) tGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCg < 1:21837682/68‑1 (MQ=39) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGTTCGGTGATAGAGGATTACTCGca > 1:11844342/1‑66 (MQ=255) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGcc > 1:36953893/1‑67 (MQ=255) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGcc > 1:20250433/1‑67 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTGGAATTTGGTCGGTGATAGAGGATTACTCGCCACt < 1:2447564/67‑1 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACt < 1:9682462/67‑1 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACt < 1:27547127/67‑1 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACt > 1:25556304/1‑67 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACt > 1:12220355/1‑67 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACt > 1:2090283/1‑67 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGGCGGTGATAGAGGATTACTCGCCACt < 1:8336538/67‑1 (MQ=255) tGCAAAAAAGCCTGCTCGTGGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACt > 1:25012675/1‑67 (MQ=255) gCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTc < 1:16926712/68‑1 (MQ=255) AAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTg < 1:11450476‑M1/66‑1 (MQ=255) AAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGc < 1:14858141‑M1/67‑1 (MQ=255) AGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc < 1:22178698‑M1/68‑1 (MQ=255) AGCCTGCTCGTTGAGCAGGCTTTGCGATTTTGGTCGGTGATAGAGGATTACTCGCCACGTCGTGGCTc < 1:18489922‑M1/68‑1 (MQ=255) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc < 1:16522095‑M1/67‑1 (MQ=255) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc < 1:27171089‑M1/67‑1 (MQ=255) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc < 1:4446700‑M1/67‑1 (MQ=255) CCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCg < 1:34023907‑M1/67‑1 (MQ=255) CCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGGGATAGAGGATTACTCGCCACTTCGTGGCTCg < 1:33039085‑M1/67‑1 (MQ=255) CTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGcc > 1:19976373‑M1/1‑68 (MQ=255) CTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGcc > 1:7640990‑M1/1‑68 (MQ=255) CTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGc > 1:12637094‑M1/1‑67 (MQ=255) CTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGc > 1:6665086‑M1/1‑67 (MQ=255) TGCTCGTTGAGCAGGCTTTTCGAATTTGGGCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGccc > 1:27749360‑M1/1‑68 (MQ=255) GCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCt > 1:26673795‑M1/1‑68 (MQ=255) TCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGc < 1:23721469‑M1/68‑1 (MQ=255) TCGTGGACCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGccc > 1:715368‑M1/1‑65 (MQ=255) cAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGtt > 1:8965031/1‑68 (MQ=255) cAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGtt > 1:11052163/1‑68 (MQ=255) cAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGtt > 1:35950028/1‑68 (MQ=255) cAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGATCGCCCTGCGGGCCGtt > 1:5193265/1‑68 (MQ=255) cTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTg > 1:12943241/1‑68 (MQ=255) cTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTg > 1:15382124/1‑68 (MQ=255) cTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTg > 1:4340050/1‑68 (MQ=255) cTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTg > 1:34553127/1‑68 (MQ=255) ttttCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTgg < 1:30634805/68‑1 (MQ=255) | GCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGC > CP009273/3701736‑3701866 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |