New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 64557398 (0.840)35 (0.090) 12/94 NT 8.6% coding (1224/2352 nt) polB DNA polymerase II
?CP009273 = 64577 412 (1.040)coding (1204/2352 nt) polB DNA polymerase II

Only 100 of 630 total aligned reads displayed.

TACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTCGC  >  CP009273/64510‑64644
                                                                   |                                                                   
 aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAgcc                                                                     <  1:32461709/67‑1 (MQ=255)
     gCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccag                                                                <  1:21354331‑M2/68‑6 (MQ=255)
      cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:8024754‑M2/68‑7 (MQ=255)
      cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgacagg                                                               <  1:17584379‑M2/68‑7 (MQ=255)
       ttttATAGTCCGGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:25412144‑M2/1‑61 (MQ=255)
       ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:26206088‑M2/1‑61 (MQ=255)
        tttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggc                                                             >  1:21007849‑M2/1‑60 (MQ=255)
         ttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggct                                                            >  1:26874829‑M2/1‑59 (MQ=255)
           ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggcttt                                                          >  1:1394996‑M2/1‑57 (MQ=255)
           ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggcttt                                                          >  1:19536584‑M2/1‑57 (MQ=255)
           ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggcttt                                                          >  1:8885720‑M2/1‑57 (MQ=255)
           ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg                                                           >  1:13582967/1‑67 (MQ=255)
           ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg                                                           >  1:4837290/1‑67 (MQ=255)
           ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg                                                           >  1:22230377/1‑67 (MQ=255)
           ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg                                                           >  1:39058363/1‑67 (MQ=255)
           ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg                                                           >  1:24143039/1‑67 (MQ=255)
           ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg                                                           >  1:20487058/1‑67 (MQ=255)
           ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATAACGTAGCCGCCAGGGCTg                                                           >  1:17847745/1‑67 (MQ=255)
           ataGGCCAGCACCAGCACTGAATCATACAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggcttt                                                          >  1:37789219‑M2/1‑57 (MQ=255)
             aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:12883112/1‑68 (MQ=255)
             aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:25114968/1‑68 (MQ=255)
                ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttatgat                                                     >  1:34937675‑M2/1‑52 (MQ=255)
                ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttatgat                                                     >  1:38132710‑M2/1‑52 (MQ=255)
                ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc                                                     >  1:30582205/1‑68 (MQ=255)
                ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc                                                     >  1:11778318/1‑68 (MQ=255)
                ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc                                                     >  1:11175220/1‑68 (MQ=255)
                 cagcaccagcacTGACTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcg                                                    <  1:5974929/68‑1 (MQ=255)
                 cagcaccagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcg                                                    <  1:4300339/68‑1 (MQ=255)
                 cagcaccagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcg                                                    <  1:29756210/68‑1 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttatgattcagt                                                >  1:32030522‑M2/1‑47 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttatgattcagt                                                >  1:29501874‑M2/1‑47 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttatgattca                                                  >  1:28920776‑M2/1‑47 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:10658468/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:36329867/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:12358556/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:7384142/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:5174640/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCACCACGTAGCCgccagggctttatgattcagt                                                >  1:6644726‑M2/1‑47 (MQ=255)
                          cacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACt                                            >  1:13146537/1‑67 (MQ=255)
                           acTGAATCATAACGCCCTGGCCGTGCATCCCTCAGGTGGCCgccagggctttatgattcagtgctggt                                          >  1:18422300‑M2/1‑41 (MQ=255)
                           acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttatgattcagtgctggt                                          >  1:19103810‑M2/1‑41 (MQ=255)
                           acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTc                                          >  1:340619/1‑68 (MQ=255)
                           acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTc                                          >  1:27816458/1‑68 (MQ=255)
                           acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTc                                          >  1:34273129/1‑68 (MQ=255)
                           acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTc                                          >  1:3382102/1‑68 (MQ=255)
                                aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttatgattcagtgctggtgctgg                                     >  1:36753178‑M2/1‑36 (MQ=255)
                                aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:6946201/1‑68 (MQ=255)
                                aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:31606522/1‑68 (MQ=255)
                                aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:6307704/1‑68 (MQ=255)
                                 tCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCgag                                    <  1:34729426/68‑1 (MQ=255)
                                 tCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCgag                                    >  1:25923518/1‑68 (MQ=255)
                                 tCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCgag                                    >  1:22597851/1‑68 (MQ=255)
                                  cATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCgaga                                   <  1:15911551/68‑1 (MQ=255)
                                  cATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCgaga                                   <  1:35776255/68‑1 (MQ=255)
                                  cATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCgaga                                   <  1:8705716/68‑1 (MQ=255)
                                   aTAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGAt                                  >  1:23074990/1‑68 (MQ=255)
                                   aTAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGAt                                  >  1:10006265/1‑68 (MQ=255)
                                     aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:24407853/1‑68 (MQ=255)
                                     aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:33002044/1‑68 (MQ=255)
                                     aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:21719754/1‑68 (MQ=255)
                                       aGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAg                               >  1:27377642/1‑67 (MQ=255)
                                        gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:12637250/1‑68 (MQ=255)
                                         cccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:23814612/1‑67 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCgccagggctttatgattcagtgctggtgctggactataaaag                           >  1:17378018‑M2/1‑26 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:1027917/1‑68 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:23584432/1‑68 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:2296978/1‑68 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:32679017/1‑68 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:18647336/1‑68 (MQ=255)
                                           cTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGcgcg                          <  1:28641721/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:7218631/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:7829687/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:3756517/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:5827656/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:9557905/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:4587785/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:35116661/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:3325315/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:12083806/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:16287294/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:1657163/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:18164457/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:24693476/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:21914946/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTACCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:37092776/68‑1 (MQ=255)
                                            tGGCCGTGAAGCTATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:8506901/68‑1 (MQ=255)
                                            tGGCCGTGAAGCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:11508335/68‑1 (MQ=255)
                                               ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:19862131/1‑68 (MQ=255)
                                               ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:30116599/1‑68 (MQ=255)
                                                    aaTCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGCTTAGGCGCTACATAACCa                 >  1:29150641/1‑68 (MQ=255)
                                                      tCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAgc               <  1:4064455/68‑1 (MQ=255)
                                                      tCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAgc               <  1:14898750/68‑1 (MQ=255)
                                                      tCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAgc               >  1:30961605/1‑68 (MQ=255)
                                                         aTCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGcgcg            <  1:17078132/68‑1 (MQ=255)
                                                            aCGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGAt          >  1:15326303/1‑67 (MQ=255)
                                                            aCGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGAt          >  1:14678847/1‑67 (MQ=255)
                                                            aCGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGAt          >  1:31325205/1‑67 (MQ=255)
                                                                aGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCCGCGCGATGCAt      >  1:10938304/1‑67 (MQ=255)
                                                                 gccgccAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTc    >  1:38632312/1‑68 (MQ=255)
                                                                  ccgccAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTc    >  1:27561425/1‑67 (MQ=255)
                                                                   |                                                                   
TACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTCGC  >  CP009273/64510‑64644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.