| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4512275 = | 416 (0.880) | 32 (0.080) | 15/92 | NT | 7.7% | coding (1637/1968 nt) | yjhG | putative dehydratase |
| ? | CP009273 | 4512318 = | 427 (1.100) | coding (1594/1968 nt) | yjhG | putative dehydratase | |||||
Only 100 of 720 total aligned reads displayed.
GCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTTTCTTCC > CP009273/4512251‑4512385 | ccAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGt < 1:28509576/67‑1 (MQ=255) ccAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGt < 1:24634997/67‑1 (MQ=255) ccAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTg > 1:1823439/1‑68 (MQ=255) cAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGa < 1:37112377/68‑1 (MQ=255) cAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGa < 1:11916201/68‑1 (MQ=255) gcTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTaa < 1:38017472/68‑1 (MQ=255) gcTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTa > 1:25882540/1‑67 (MQ=255) tCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGa < 1:3546455/68‑1 (MQ=255) tCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGa < 1:24962164/68‑1 (MQ=255) tgtttcgttaatcaCCGATGCCCGCGCCAGTAGCCACGCCCGAGAAACGTGCATCGGTGATTAACGaa < 1:12357323‑M1/54‑1 (MQ=255) tgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGaa < 1:27588140‑M1/54‑1 (MQ=255) tGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGaa > 1:1000444/1‑67 (MQ=255) tGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGaa > 1:17312406/1‑67 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa < 1:9365317/67‑1 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa < 1:37704746/67‑1 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa < 1:19864675/67‑1 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:24046060/1‑68 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:8815754/1‑68 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:32829283/1‑68 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:19297730/1‑68 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:36432095/1‑68 (MQ=255) ccccACATGGCCGAGGCACGCGCCAGTAGAAACGCCCGTGAAACCTGCATCGGTGATTAACGAAACa < 1:6820985/67‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt < 1:14062802/67‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:347437/68‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:8627879/68‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:27826115/68‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:15405113/68‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:2051441/68‑1 (MQ=255) ccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGc < 1:26672831/68‑1 (MQ=255) caTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCtt > 1:14740242/1‑67 (MQ=255) aTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTa > 1:12862967/1‑67 (MQ=255) tcaccgatgcacgtttctccggcgtttctactggcgcgtgcatcggTGATTAACGAAACATGCTTAcc < 1:22034595‑M2/22‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:26484514/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:5705861/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:4535060/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:30588215/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:31984084/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:32312304/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:36007197/68‑1 (MQ=255) gCCGATGCACGCGCCAGTAGAAACGCCCGAGAACCGTGCATCGGTGATTAACGAAACATGCTTACCGt > 1:14370743/1‑68 (MQ=255) gCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt > 1:19121533/1‑68 (MQ=255) cccgatgcacgttgctcgggcgtttctactggcgcgtgcatcggTGATTAACGAAACATGCTTAcc < 1:13208942‑M2/22‑1 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt > 1:4897537‑M1/1‑67 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt > 1:33134691‑M1/1‑67 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa < 1:20115746‑M1/68‑1 (MQ=255) GATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATg > 1:1270990‑M1/1‑68 (MQ=255) GATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATg > 1:8260323‑M1/1‑68 (MQ=255) TGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGAc < 1:19699879‑M1/68‑1 (MQ=255) CACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCGTACCGTATGACAg < 1:32123166‑M1/68‑1 (MQ=255) ACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGa < 1:17182801‑M1/68‑1 (MQ=255) CGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGAt > 1:5941393‑M1/1‑68 (MQ=255) CGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGAt > 1:748649‑M1/1‑68 (MQ=255) cgcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGAt > 1:16351998/1‑66 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:34407560/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:11083148/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:29289430/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCAGCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:916662/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTACATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGc < 1:1781727/67‑1 (MQ=255) ccAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt > 1:23608128/1‑67 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg > 1:1037345/1‑67 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg < 1:10757517/67‑1 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg > 1:21330766/1‑67 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg > 1:13478451/1‑67 (MQ=255) aaaCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGc > 1:36766237/1‑67 (MQ=255) aaaCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGc > 1:38664747/1‑67 (MQ=255) aaaCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGATTACCGTATGACAGATGCTTCAGGGc > 1:34997431/1‑67 (MQ=255) aaCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGc < 1:6517083/66‑1 (MQ=255) aaCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGc > 1:12141327/1‑66 (MQ=255) aCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGc > 1:28217304/1‑65 (MQ=255) aCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACt < 1:11549297/68‑1 (MQ=255) aCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACt < 1:6273067/68‑1 (MQ=255) aCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACt < 1:30342914/68‑1 (MQ=255) aCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACt < 1:25497532/68‑1 (MQ=255) aCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACt < 1:1572045/68‑1 (MQ=255) aCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACt < 1:22398571/68‑1 (MQ=255) aCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACt < 1:297682/68‑1 (MQ=255) cGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTa > 1:3090703/1‑41 (MQ=255) cGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTg > 1:14974937/1‑68 (MQ=255) cGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTg > 1:7738946/1‑68 (MQ=255) cGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTg < 1:21065682/68‑1 (MQ=255) cGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTg < 1:5167458/68‑1 (MQ=255) cccGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGt > 1:39047384/1‑68 (MQ=255) ccGAGAAAGGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGt < 1:35697181/67‑1 (MQ=255) gaAACGTGCTTCGGTGATTAACGAAACATTCTTACCGTTTGACAGATGCTTCAGGGCAGTGGTAAca < 1:3387592/67‑2 (MQ=255) gaAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAAcc < 1:28890833/67‑1 (MQ=255) aaCGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTgg < 1:214941/68‑1 (MQ=255) aaCGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTgg < 1:2896318/68‑1 (MQ=255) aaCGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTgg > 1:33718377/1‑68 (MQ=255) aaCGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTgg > 1:3146464/1‑68 (MQ=255) aaCGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTg < 1:23359752/67‑1 (MQ=255) cgtgcatcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTa > 1:16016142‑M2/11‑68 (MQ=255) gcatcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAgg < 1:26120891‑M2/60‑1 (MQ=255) gcatcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAgg < 1:22953104‑M2/60‑1 (MQ=255) gcatcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGt < 1:20730898‑M2/61‑1 (MQ=255) tcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGtt > 1:34095367‑M2/5‑66 (MQ=255) tcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttc < 1:27081109‑M2/64‑1 (MQ=255) tcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttc < 1:1867140‑M2/64‑1 (MQ=255) tcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttc < 1:16722222‑M2/64‑1 (MQ=255) cggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttct < 1:37381536‑M2/65‑1 (MQ=255) tGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTTTCTTcc > 1:4228941/1‑68 (MQ=255) | GCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTTTCTTCC > CP009273/4512251‑4512385 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |