| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4616792 | 329 (0.700) | 4 (0.010) | 3/102 | NT | 1.2% | coding (1064/1383 nt) | radA | DNA repair protein |
| ? | CP009273 | = 4616815 | 368 (0.860) | coding (1087/1383 nt) | radA | DNA repair protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 427 total aligned reads displayed.
CCTGCTGGCTGTGTTGCACCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGATGGTTTCCAG > CP009273/4616748‑4616879 | ccTGCTGGCTGTGTTGCACCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTgg < 1:15613212/68‑1 (MQ=255)ccTGCTGGCTGTGTTGCACCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTgg < 1:6647876/68‑1 (MQ=255)ccTGCTGGCTGTGTTGCACCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTgg < 1:22756126/68‑1 (MQ=255) ctgctgGCTGTGTTGCACCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTgg > 1:38749831/1‑67 (MQ=255) gctgTGTTGCACCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTcggcg > 1:27504078/1‑67 (MQ=255) tgtgTTGCACCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCggcggc < 1:1371960/67‑1 (MQ=255) tgtgTTGCACCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGgcggcg > 1:31372033/1‑68 (MQ=255) gtgtTGCACCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGt > 1:23498975/1‑68 (MQ=255) gtTGCACCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGa > 1:3313204/1‑68 (MQ=255) gtTGCACCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGa > 1:15174640/1‑68 (MQ=255) ttGCACCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGaa > 1:23920106/1‑68 (MQ=255) ttGCACCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGaa > 1:12528276/1‑68 (MQ=255) tGCACCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAg < 1:12872601/68‑1 (MQ=255) tGCACCGTCACCGTGGCCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAg < 1:8680101/68‑1 (MQ=255) gCACCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAgg > 1:21522913/1‑68 (MQ=255) aCCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTa > 1:34588479/1‑68 (MQ=255) aCCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTa > 1:33988857/1‑68 (MQ=255) aCCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTa > 1:21093576/1‑68 (MQ=255) aCCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTa > 1:10070651/1‑68 (MQ=255) aCCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTa > 1:2204846/1‑68 (MQ=255) aCCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTa > 1:22953489/1‑68 (MQ=255) aCCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTa > 1:24344053/1‑68 (MQ=255) aCCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTa > 1:29938916/1‑68 (MQ=255) aCCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTa > 1:6119740/1‑68 (MQ=255) aCCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTa > 1:4491149/1‑68 (MQ=255) cGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAAc < 1:18016616/68‑1 (MQ=255) cACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGa > 1:20360731/1‑68 (MQ=255) ggtggtCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGaaa > 1:12412850/1‑67 (MQ=255) tggtCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAGCCGAAACCa > 1:29149524/1‑68 (MQ=255) tggtCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCa > 1:32918661/1‑68 (MQ=255) tggtCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCa > 1:16253129/1‑68 (MQ=255) ggtCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAg > 1:28181739/1‑68 (MQ=255) ggtCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAg > 1:30424503/1‑68 (MQ=255) ggtCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAg > 1:11935900/1‑68 (MQ=255) ggtCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAg > 1:5585010/1‑68 (MQ=255) ggtCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAg > 1:32310925/1‑68 (MQ=255) ggtCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAg > 1:36065174/1‑68 (MQ=255) ggtCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAg > 1:18525192/1‑68 (MQ=255) ggtCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAg > 1:27656783/1‑68 (MQ=255) ggtCTGCAAATGGCCGATCAGGATGTGTTAGTTAACGTGGTCGGCGGCGTGAAGGTAACCTAAACCAg > 1:37107213/1‑68 (MQ=255) aaaTGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCg > 1:14068578/1‑66 (MQ=255) aaaTGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCg > 1:24587406/1‑66 (MQ=255) aaaTGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGAAACCGAAACCAGTGCCg > 1:16790009/1‑66 (MQ=255) aaaTGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAAGTAACCGAAACCAGTGCCGa < 1:27195106/67‑1 (MQ=255) aaaTGGCCGATCAGGATGTGTTTGTGAACGTGGTAGGCGGCGTGAAGGTAACCGAAACCAGTGCCg > 1:19259087/1‑66 (MQ=255) aaTGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACt > 1:571410/1‑68 (MQ=255) aaTGGCCGATCAGGATGTGTTTGTGAAAGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACt > 1:35256295/1‑68 (MQ=255) gCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGc > 1:30925629/1‑68 (MQ=255) gCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGc > 1:1017967/1‑68 (MQ=255) gCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGc > 1:26611402/1‑68 (MQ=255) gCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGc > 1:22509105/1‑68 (MQ=255) gCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGc > 1:24976328/1‑68 (MQ=255) ccGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGc < 1:26097421/67‑1 (MQ=255) ccGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGc < 1:35466276/67‑1 (MQ=255) cGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCg < 1:374418/67‑1 (MQ=255) gATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGtt < 1:25719645/68‑1 (MQ=255) tCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGtt > 1:26412519/1‑66 (MQ=255) tCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGtt > 1:3643396/1‑66 (MQ=255) tCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGtt > 1:20849483/1‑66 (MQ=255) cAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTAct < 1:29365066/68‑1 (MQ=255) aGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTAct > 1:34742254/1‑67 (MQ=255) aTGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTActgctg > 1:13068546/1‑68 (MQ=255) aTGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTActgctg > 1:25489269/1‑68 (MQ=255) aTGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTActgctg > 1:9096605/1‑68 (MQ=255) aTGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTActgc < 1:3961341/66‑1 (MQ=255) tgtgTTTGTGAACGTGGtcggccatttgcagaccaccgtgacggtgcaacacagccagcaggattgcc < 1:7005427‑M2/68‑52 (MQ=255) tgtgTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTActgctg > 1:14684830/1‑67 (MQ=255) tgtgTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTActgctg > 1:17131668/1‑67 (MQ=255) tgtgTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTActgctg > 1:3806659/1‑67 (MQ=255) tgtgTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTActgctg > 1:34241077/1‑67 (MQ=255) tgtgTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTActgctg > 1:7601934/1‑67 (MQ=255) tgtgTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTActgctg > 1:17782138/1‑67 (MQ=255) tgtgTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTActgctg > 1:7780184/1‑67 (MQ=255) tgtgTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTActgctg > 1:35664071/1‑67 (MQ=255) tgtTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCg > 1:18336202/1‑68 (MQ=255) tgtTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCg > 1:5908255/1‑68 (MQ=255) tttGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGAt > 1:20185107/1‑68 (MQ=255) tttGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGAt > 1:38505078/1‑68 (MQ=255) tttGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGAt > 1:2855080/1‑68 (MQ=255) tttGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGAt > 1:32132566/1‑68 (MQ=255) tttGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGAt > 1:28870244/1‑68 (MQ=255) tttGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGAt > 1:5412205/1‑68 (MQ=255) tttGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGAt > 1:11528040/1‑68 (MQ=255) ttGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGAt < 1:26347531/67‑1 (MQ=255) tgtgAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGATgg < 1:8077373/68‑1 (MQ=255) gtgAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGATGGt < 1:38995021/68‑1 (MQ=255) gtgAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGATGGt < 1:10838516/68‑1 (MQ=255) tgAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGATGGtt > 1:32616636/1‑68 (MQ=255) tgAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGATGGtt > 1:42788/1‑68 (MQ=255) tgAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGATGGtt > 1:25329665/1‑68 (MQ=255) tgAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGATGGtt > 1:11093906/1‑68 (MQ=255) gAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGATGGtt < 1:19466167/67‑1 (MQ=255) gAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGATGGtt < 1:24008574/67‑1 (MQ=255) gAACGTGGTCGGCGGCGGGAAGGTAACCGAAACCAGTGCCGACTGAGCGTTACTGCTGGCGATGGtt < 1:5026493/67‑1 (MQ=255) gAACGTGGGCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGATGGtt < 1:8349902/67‑1 (MQ=255) aaCGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGATGGttt > 1:18816668/1‑67 (MQ=255) aaCGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGATGGttt > 1:9630109/1‑67 (MQ=255) aaCGTGGTCGGCGGCGTGAAGGTAACCGAAACAAGTGCCGACTTAGCGTTACTGCTGGCGATGGttt > 1:31865971/1‑67 (MQ=255) cGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGATGGTTTCCa > 1:13513798/1‑68 (MQ=255) gTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGATGGTTTCCa > 1:21852620/1‑67 (MQ=255) | CCTGCTGGCTGTGTTGCACCGTCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCGACTTAGCGTTACTGCTGGCGATGGTTTCCAG > CP009273/4616748‑4616879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |