| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 248303 | 160 (0.340) | 25 (0.060) | 8/96 | NT | 12.0% | coding (919/1056 nt) | dinB | DNA polymerase IV |
| ? | CP009273 | = 248351 | 231 (0.570) | coding (967/1056 nt) | dinB | DNA polymerase IV | |||||
Only 100 of 427 total aligned reads displayed.
GGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAG > CP009273/248284‑248418 | ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGTTCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc > 1:21723288/1‑68 (MQ=255)ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc > 1:10917171/1‑68 (MQ=255)ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc > 1:13959058/1‑68 (MQ=255) gAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc > 1:1900415/1‑67 (MQ=255) caccgcgcccGCCGCGGCGGAATAAAGCTGATCTAATCGCCCCCGCGCGTAAAACCTGGGATGAAcg < 1:7706641‑M1/57‑1 (MQ=255) agtaCGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg > 1:14541092/4‑67 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCGCCGCGCGTAAAACCTGGGATGAACg < 1:27629157‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:8480499‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:12302462‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:26614878‑M2/67‑2 (MQ=255) accgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcgcc < 1:3100238‑M1/59‑1 (MQ=255) accgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcgcc < 1:9304591‑M1/59‑1 (MQ=255) accgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcgcc < 1:38893268‑M1/59‑1 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcgg > 1:11850297‑M2/1‑61 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcgg > 1:28370472‑M2/1‑61 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcg < 1:8085108‑M2/67‑7 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGAGGAACgccgcgg > 1:29373244‑M2/1‑61 (MQ=255) cccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGGAAAACCTGGGATGAACGCCgcggcg < 1:33310923‑M1/65‑1 (MQ=255) ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg < 1:20023583/68‑1 (MQ=255) CCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggc < 1:6811496‑M1/67‑1 (MQ=255) CCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggc < 1:4485475‑M1/67‑1 (MQ=255) cgcgGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggccagac > 1:25793850‑M2/1‑54 (MQ=255) gcgGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggccagacgt > 1:15035549‑M2/1‑53 (MQ=255) GCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGcgcg > 1:32875763‑M1/1‑68 (MQ=255) GCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGcgcg < 1:33482650‑M1/68‑1 (MQ=255) GCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGcgcg > 1:23580831‑M1/1‑68 (MQ=255) GCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGcgcg > 1:12105282‑M1/1‑68 (MQ=255) ggCTGAATACAGCTCATCTCCACGCCACCCCGCGTAAACCCGCTCATGAACGCCGCGGCGGGCGCGgt < 1:8290518/68‑1 (MQ=255) ggCGGAATAAAGCTGATCAAATCGCCACCGCGCGTAAAACCGGGGATGAACgccgcggccagacgtgc > 1:17897364‑M2/1‑51 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:26319165‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:25453569‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:17170371‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:18694732‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:9120560‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:14166616‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:13633827‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:35424379‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:12828198‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGACCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:18377867‑M1/1‑68 (MQ=255) cTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggccagacgtgct > 1:16429212‑M2/1‑49 (MQ=255) cTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggccagacgtgct > 1:10164792‑M2/1‑49 (MQ=255) cTGAATAAAGCTGAGCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggccagacgtgct > 1:27486292‑M2/1‑49 (MQ=255) cTGAATAAAGCTCATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggccagacgtgct > 1:34152698‑M2/1‑49 (MQ=255) CTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgtg > 1:35623762‑M1/1‑67 (MQ=255) tGAATAACGCTGATCACATCGCCACCGCGCGTAAAACCTGGGATGACCgccgcggccagacgtgctcc > 1:4342599‑M2/1‑48 (MQ=255) tGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgtgt < 1:37864551/67‑1 (MQ=255) tGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgtgt < 1:1668482/67‑1 (MQ=255) tGAAAAAAGCTGATCTAATCGCCCCCGCGCGTAAAACCTGGGATGAACgccgcggccagacgtgctcc > 1:13334302‑M2/1‑48 (MQ=255) ggAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGACCGCCGCGGCGGGCGCGgtgt < 1:8715792/66‑1 (MQ=255) aaTAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt < 1:27119549/63‑1 (MQ=255) aTAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGGTGAACGCCGCGGCGGGCGCGGTGTGCg < 1:24382049/67‑1 (MQ=255) aTAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg < 1:4912637/67‑1 (MQ=255) aTAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg < 1:32303921/67‑1 (MQ=255) tAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTc < 1:39074400/68‑1 (MQ=255) tAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTc < 1:21976454/68‑1 (MQ=255) aaaGCTGATCTAATCGCCTCCGCGCGTAAAACCTGGGATGCACGCCGCGGCGGGCGCGGTGTGCg > 1:16918552/1‑65 (MQ=255) aaaGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg > 1:17385566/1‑65 (MQ=255) aaaGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg > 1:33333546/1‑65 (MQ=255) acgCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtg < 1:33740684/66‑1 (MQ=255) aaGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtg < 1:22497282/68‑1 (MQ=255) gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt > 1:31946618/1‑68 (MQ=255) gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt > 1:2810380/1‑68 (MQ=255) gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt > 1:36016896/1‑68 (MQ=255) tGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt < 1:3987288/66‑1 (MQ=255) tGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt < 1:31494556/66‑1 (MQ=255) gATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTggg < 1:13089455/68‑1 (MQ=255) tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTgggg < 1:19784596/67‑1 (MQ=255) tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTggg > 1:14872297/1‑66 (MQ=255) tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTCGTggg > 1:32474661/1‑66 (MQ=255) aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc < 1:9488334/68‑1 (MQ=255) aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc < 1:6528026/68‑1 (MQ=255) aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc < 1:16280069/68‑1 (MQ=255) tCGCCACCGCGCGTAAAACCTGGTATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt < 1:7265301/68‑1 (MQ=255) tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt < 1:38078523/68‑1 (MQ=255) tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt > 1:3857282/1‑68 (MQ=255) tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt > 1:10677610/1‑68 (MQ=255) tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt < 1:35092344/68‑1 (MQ=255) tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt < 1:3306315/68‑1 (MQ=255) tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt > 1:26113667/1‑68 (MQ=255) tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt > 1:25170267/1‑68 (MQ=255) tCGCCACCGCGCGTAAAACCTGGGATGAAAGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt > 1:34012433/1‑68 (MQ=255) cACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTgggg < 1:1157602/58‑1 (MQ=255) aCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc > 1:5414787/1‑68 (MQ=255) aCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc > 1:6206662/1‑68 (MQ=255) aCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc > 1:21291269/1‑68 (MQ=255) cgcgcgTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGt > 1:19210702/1‑68 (MQ=255) gcgTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTg < 1:23803482/67‑1 (MQ=255) aaaCCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGAc < 1:3057037/68‑1 (MQ=255) ccTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGAccc > 1:15519256/1‑67 (MQ=255) ccTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGAccc > 1:15676596/1‑67 (MQ=255) ccTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGAccc > 1:22788905/1‑67 (MQ=255) gATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAAt > 1:9692818/1‑68 (MQ=255) gATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAAt > 1:28526958/1‑68 (MQ=255) aTGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATg > 1:38429143/1‑68 (MQ=255) aTGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGCGCTGCATGTGACGTTGCTTGACCCGCAAATg > 1:30441509/1‑68 (MQ=255) tGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAATTg < 1:2020811/67‑1 (MQ=255) aCGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGaaa > 1:207067/1‑68 (MQ=255) aCGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGaaa > 1:24861380/1‑68 (MQ=255) cgccgcGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAg > 1:11260930/1‑68 (MQ=255) cgccgcGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAg > 1:37102210/1‑68 (MQ=255) | GGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAG > CP009273/248284‑248418 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |