New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 442673 =443 (0.940)33 (0.090) 13/90 NT 7.4% coding (489/891 nt) cyoE protoheme IX farnesyltransferase
?CP009273 442734 = 473 (1.250)coding (428/891 nt) cyoE protoheme IX farnesyltransferase

Only 100 of 832 total aligned reads displayed.

AGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA  >  CP009273/442668‑442800
                                                                  |                                                                  
agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc                                                                    <  1:32833168/67‑1 (MQ=255)
   aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGAGCACCGGCGGCGCAGCGcc                                                                   <  1:29965028/65‑1 (MQ=255)
    tCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgag                                                               >  1:3051008/1‑68 (MQ=255)
     CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              >  1:30170911‑M1/1‑68 (MQ=255)
     CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              >  1:24555947‑M1/1‑68 (MQ=255)
     CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              >  1:5191005‑M1/1‑68 (MQ=255)
      GCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              <  1:31344230‑M1/67‑1 (MQ=255)
      GCTGCGCCGCAATCGAACTCTCCGGTTCCCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              <  1:8048594‑M1/67‑1 (MQ=255)
           gccgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgCCGGAGAGCGaa                                                         >  1:32045852‑M2/56‑67 (MQ=255)
           GCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGaa                                                         <  1:24350388‑M1/67‑1 (MQ=255)
             CGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAAcc                                                       >  1:15643332‑M1/1‑67 (MQ=255)
             CGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAAcc                                                       >  1:35422934‑M1/1‑67 (MQ=255)
             CGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCa                                                      >  1:10777396‑M1/1‑68 (MQ=255)
             CGCTATCGAACTCACCGGGTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAAcc                                                       >  1:31693947‑M1/1‑67 (MQ=255)
              GCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCaa                                                     >  1:20037241‑M1/1‑68 (MQ=255)
                tATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATc                                                   <  1:12716576/68‑1 (MQ=255)
                   cGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAAc                                                >  1:20501259/1‑68 (MQ=255)
                     aaCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:28867138/1‑68 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:35686159/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:22992020/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:37029459/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:4231946/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCCGAGAGCGAACCAATCAACGt                                              >  1:7414697/1‑67 (MQ=255)
                       cggctactgggcggtaaccggtgagtgcgatagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGc                                            <  1:18641854‑M2/25‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCTGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:22608728/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:33115281/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:6373030/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:32434069/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:23615115/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:27778923/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:27959676/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:28150273/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:30351861/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:29540673/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:37622937/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:15359598/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:38879354/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:1351520/68‑1 (MQ=255)
                        ggctaccggccggtaaccggtgaggtcgataccggcgcagcgCCGGAGAGCGAACCAATCAACGTGc                                            <  1:5749341‑M2/25‑1 (MQ=255)
                         cACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCg                                          <  1:11683269/68‑1 (MQ=255)
                          aCCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGt                                         >  1:21856127/1‑68 (MQ=255)
                           ccGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTa                                        <  1:2085159/68‑1 (MQ=255)
                            cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACTTGCCGTAg                                       <  1:2165989/68‑1 (MQ=255)
                            cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:6738740/68‑1 (MQ=255)
                            cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:21325583/68‑1 (MQ=255)
                            cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:28379828/68‑1 (MQ=255)
                               ttACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGAc                                     <  1:31014778/67‑1 (MQ=255)
                               ttACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACa                                    >  1:31877099/1‑68 (MQ=255)
                                tACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACag                                   >  1:34569910/1‑68 (MQ=255)
                                  ccGCACAGTAGCCGATCACCGTCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACagag                                 >  1:34861159/1‑68 (MQ=255)
                                    gCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:26221368/1‑68 (MQ=255)
                                    gCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:12495409/1‑68 (MQ=255)
                                    gCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:1939531/1‑68 (MQ=255)
                                    gCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:16780882/1‑68 (MQ=255)
                                      acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc                             >  1:31513931/1‑68 (MQ=255)
                                      acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc                             >  1:22136672/1‑68 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCg                            <  1:10482033/64‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:13916279/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:34225760/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:33907141/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:18805601/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGt                           <  1:4023568/65‑1 (MQ=255)
                                            gCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGTCAGAGTGGCGTTTCa                       >  1:11379678/1‑68 (MQ=255)
                                            gCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCa                       >  1:14800636/1‑68 (MQ=255)
                                            gCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCa                       >  1:37819035/1‑68 (MQ=255)
                                            gCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGGTTCa                       >  1:36409452/1‑68 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCa                       <  1:36686183/66‑1 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCa                       <  1:17458199/66‑1 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg                     >  1:879499/1‑68 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg                     >  1:11972491/1‑68 (MQ=255)
                                               gATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    <  1:37236312/68‑1 (MQ=255)
                                                aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    >  1:23460518/1‑67 (MQ=255)
                                                aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    >  1:5059129/1‑67 (MQ=255)
                                                aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    >  1:4599416/1‑67 (MQ=255)
                                                aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    >  1:38607912/1‑67 (MQ=255)
                                                 tCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTAc                  >  1:14111376/1‑68 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:25405879/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:25717171/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:26613455/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:16514956/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:17246797/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:26786746/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:27067490/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:24991965/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:10116418/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:14517660/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:17828670/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:18274763/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:7741445/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGGTTCATGTACAgg               <  1:13077503/68‑1 (MQ=255)
                                                    acagcgccgccgcgCCGCAGCGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:27327139‑M2/54‑1 (MQ=255)
                                                     cggcggCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGc              <  1:16106706/68‑1 (MQ=255)
                                                     ccgcgccgcaccgCCGGCGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGc              <  1:35818793‑M2/55‑1 (MQ=255)
                                                       gcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta            >  1:30752248‑M2/12‑68 (MQ=255)
                                                       gcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta            >  1:9693623‑M2/12‑68 (MQ=255)
                                                        cggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta            <  1:19752098‑M2/57‑1 (MQ=255)
                                                        cggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta            <  1:29062810‑M2/57‑1 (MQ=255)
                                                              agcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACg      <  1:36153411‑M2/63‑1 (MQ=255)
                                                              agcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACg      <  1:33489431‑M2/63‑1 (MQ=255)
                                                                 gCCGGAGAGCGAACCAATCAACGTGCCGAAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCg   >  1:8477836‑M2/2‑67 (MQ=255)
                                                                  |                                                                  
AGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA  >  CP009273/442668‑442800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.