| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 678193 | 214 (0.450) | 10 (0.030) | 8/94 | NT | 5.5% | coding (657/1671 nt) | hscC | Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription |
| ? | CP009273 | = 678254 | 164 (0.410) | coding (596/1671 nt) | hscC | Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription | |||||
Only 100 of 193 total aligned reads displayed.
GGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAAC > CP009273/678187‑678319 | ggCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGt < 1:25730326/68‑1 (MQ=255) cGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtg < 1:16311778‑M2/68‑3 (MQ=255) gACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgt > 1:13499031‑M2/1‑65 (MQ=255) gACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgt > 1:25266816‑M2/1‑65 (MQ=255) gACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtg > 1:27276340‑M2/1‑65 (MQ=255) gACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtg > 1:18010708‑M2/1‑65 (MQ=255) cATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcg > 1:27856166‑M2/1‑63 (MQ=255) ccGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcgcca > 1:26686160‑M2/1‑60 (MQ=255) tttAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcgccaggaccacg > 1:37093860‑M2/1‑52 (MQ=255) tttAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcgccaggaccacg > 1:32223307‑M2/1‑52 (MQ=255) ttAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCg < 1:3690891/68‑1 (MQ=255) aaCCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGaa < 1:36232376/68‑1 (MQ=255) aCCTCATCGACCAGCATATGGTTAAAATCTTCGCCACCAAGACAGTTGGCGCCAGCGGAGGCGTGAAc < 1:39059554/68‑1 (MQ=255) aCCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAAc < 1:8507322/68‑1 (MQ=255) ccTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACt < 1:37202654/68‑1 (MQ=255) tCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTc < 1:10525941/68‑1 (MQ=255) tCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAAt < 1:7008338/68‑1 (MQ=255) gACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCa < 1:20399800/68‑1 (MQ=255) gACCAGCATATGGGTAAAATCTTCGCCACCAAGAAACTtgtcgccaggaccacgcttaacgagagtga > 1:9193856‑M2/1‑38 (MQ=255) atatGTGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCgg < 1:30278468/65‑1 (MQ=255) atatGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgt > 1:4720003/1‑68 (MQ=255) atatGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgt < 1:17527298/68‑1 (MQ=255) atatGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgt < 1:8201040/68‑1 (MQ=255) atatGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCgg < 1:22826554/65‑1 (MQ=255) atatGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCgg < 1:22530765/65‑1 (MQ=255) atatGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCgg < 1:28838179/65‑1 (MQ=255) tatGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtg < 1:5190988/68‑1 (MQ=255) aatGGGT‑AAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtgg < 1:19114022/67‑1 (MQ=255) atGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtgg < 1:925096/68‑1 (MQ=255) atGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtgg < 1:29170829/68‑1 (MQ=255) atGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtgg < 1:4274804/68‑1 (MQ=255) atGGGAAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtgg < 1:16565508/68‑1 (MQ=255) tGGGTAATTTCTTCGCGACCAAGAAAGTTGTCGCCAGCGGAGGGGTGAACTTCAATCACCggcgtggc < 1:33424786/68‑1 (MQ=255) tGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggc < 1:31361383/68‑1 (MQ=255) tGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggc < 1:28870942/68‑1 (MQ=255) tGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggc < 1:2812321/68‑1 (MQ=255) tGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggc < 1:24861866/68‑1 (MQ=255) tGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggc < 1:23506326/68‑1 (MQ=255) tGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggc < 1:16023254/68‑1 (MQ=255) tGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggc < 1:4326319/68‑1 (MQ=255) ggTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGCACTTCAATCACCggcgtggcg > 1:33294581/1‑67 (MQ=255) ggTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAAGTTCAATCACCggcgtggcgt > 1:34186881/1‑68 (MQ=255) ggTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggcgt > 1:15705996/1‑68 (MQ=255) ggTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggcgt > 1:20600638/1‑68 (MQ=255) gTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggcgt < 1:33522786/67‑1 (MQ=255) gTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggcgt < 1:18153134/67‑1 (MQ=255) gTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggcgt < 1:11191595/67‑1 (MQ=255) gTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggcgt < 1:4490477/67‑1 (MQ=255) gTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggcgt < 1:35500883/67‑1 (MQ=255) tAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTa < 1:22405418/67‑1 (MQ=255) tAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTa < 1:9730231/67‑1 (MQ=255) tAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTa < 1:30646282/67‑1 (MQ=255) tAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTa < 1:34641994/67‑1 (MQ=255) tAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTa < 1:1435703/67‑1 (MQ=255) aaaaatCTTCCCCACCACGAAAGTtgtccccaggaccacgcttaacgagagtgaactggcagccttgt > 1:37461433‑M2/2‑24 (MQ=255) aaaaTCTTCGCCACCAAGATAGTTGTCGCCAGCTGAGGCGTTAACTTCAATCACCGGCGTGGCGTACt < 1:21228400/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGGGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:25847982/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:3527387/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:12358636/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:11541490/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:38293181/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:33728389/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:38672374/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:16463407/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:4234144/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:32986119/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:12878291/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:29573028/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:1721472/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:15723364/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:19839908/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:27809477/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:19674196/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:27491074/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:14605199/68‑1 (MQ=255) aaaTCTTCGCCACCAAGAAAGTTGTCGCCCGCGGAGGCGTGCACTTCAATCACCGGCGTGGCGTGCt > 1:37649717/1‑67 (MQ=255) aaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTc > 1:4346270/1‑67 (MQ=255) aTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCACTCACCGGCGTGGCGTACTCaa > 1:21363375/1‑68 (MQ=255) tCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCaa > 1:7659312/1‑67 (MQ=255) tCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCaa > 1:33494351/1‑67 (MQ=255) cTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGc < 1:18512156/68‑1 (MQ=255) cTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGc < 1:11115056/68‑1 (MQ=255) ttCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCa < 1:5587410/68‑1 (MQ=255) tCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCAc < 1:16798673/68‑1 (MQ=255) tCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCAc < 1:11714188/68‑1 (MQ=255) cgtcaccaAGAAAGTTGTCGCCAGCGGAGGCTTGAACTTCAATCACCGGCGTGGCGTACTCAAGCAcc < 1:7292471/65‑1 (MQ=255) cGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCAcc < 1:2389525/68‑1 (MQ=255) cGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCAcc < 1:4045141/68‑1 (MQ=255) cGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCAcc < 1:25555002/68‑1 (MQ=255) cGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCAcc < 1:13995070/68‑1 (MQ=255) accaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTaa < 1:4892254/68‑1 (MQ=255) accaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTaa < 1:19422992/68‑1 (MQ=255) accaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTaa < 1:12977463/68‑1 (MQ=255) accaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTaa < 1:10386569/68‑1 (MQ=255) accaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTaa < 1:3030412/68‑1 (MQ=255) ccaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAAc < 1:25614981/68‑1 (MQ=255) aaGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGt < 1:27995213/68‑1 (MQ=255) aaGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGt < 1:35112567/68‑1 (MQ=255) aGTTGTCGCCAGCGGCGGCGTGAACTTCAATCACCGGCGTGGCGTCCTCGAGCACCGTAACGTCAAAc > 1:19852516/1‑68 (MQ=255) aGTTGTCGCCAGCGGAGGCGTGAACGTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAAc > 1:2418995/1‑68 (MQ=255) | GGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAAC > CP009273/678187‑678319 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |