| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2691481 | 473 (1.000) | 43 (0.100) | 16/100 | NT | 8.7% | coding (429/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound |
| ? | CP009273 | = 2691501 | 479 (1.140) | coding (409/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound | |||||
Only 100 of 635 total aligned reads displayed.
AACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATA > CP009273/2691435‑2691568 | aaCGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGc < 1:6496800‑M2/68‑2 (MQ=255) aCGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGca < 1:8134970‑M2/68‑3 (MQ=255) cGCATCGTCACTACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:14860119‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:34808679‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:18323261‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:8739971‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:13227112‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:12956005‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:11552725‑M2/1‑65 (MQ=255) gCATCGTCAATACCCAACCACCATAGCCCCGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagc > 1:19301378‑M2/1‑64 (MQ=255) gCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag < 1:13634468‑M2/67‑4 (MQ=255) cATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagcc < 1:18890540‑M2/68‑6 (MQ=255) cATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGAGATAAGATTAACCCGCGGcagcc < 1:11217060‑M2/68‑6 (MQ=255) gTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaat > 1:34068275‑M2/1‑59 (MQ=255) gTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAggg < 1:27483746/68‑1 (MQ=255) gTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAggg < 1:30726682/68‑1 (MQ=255) aTACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTa < 1:28755575/68‑1 (MQ=255) aCCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATc > 1:39107948/1‑68 (MQ=255) aCCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATc > 1:22585866/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTAtgg > 1:23775498/1‑66 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:32506130/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:2563006/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:3560602/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:10389349/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:28960356/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:1066964/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:7322507/1‑68 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTTGAGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGa < 1:15869169/68‑1 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGa < 1:35125980/68‑1 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGa < 1:5699690/68‑1 (MQ=255) cAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGaa < 1:27894388/68‑1 (MQ=255) aaCCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtggc > 1:3672226‑M2/1‑49 (MQ=255) aaCCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtggc > 1:34341582‑M2/1‑49 (MQ=255) accaccATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAAt > 1:4043787/1‑68 (MQ=255) caTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAAcc > 1:3038662/1‑68 (MQ=255) caTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAAcc > 1:24863659/1‑68 (MQ=255) aTCGCCACGCTGAATTTGGCTGGCGATAAGATAAACCCGCGGcagccaaattcagcgtggctatggtg > 1:9250654‑M2/1‑42 (MQ=255) tcgccACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtggctatggtgg > 1:5394084‑M2/3‑41 (MQ=255) tAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGc < 1:30098270/68‑1 (MQ=255) tAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGc < 1:581647/68‑1 (MQ=255) tAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGc < 1:5959966/68‑1 (MQ=255) aGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:21062933/1‑68 (MQ=255) aGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:33408981/1‑68 (MQ=255) gCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:33125217/1‑67 (MQ=255) gCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:4165003/1‑67 (MQ=255) gCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:176975/1‑67 (MQ=255) gCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:32176147/1‑67 (MQ=255) cctcGCTGAATTTGGCTGGCGATAAGATTGACCCGCGGCAGCCAGGGCGTATCCAAATAAACCGCTTc > 1:8678200/4‑68 (MQ=255) ccACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTc > 1:37302401/1‑68 (MQ=255) ccACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTc > 1:15328716/1‑68 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:27022383/1‑68 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:3790431/1‑68 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:20779310/1‑68 (MQ=255) cACGCTGAATTTGGCT‑GCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:17351951/1‑67 (MQ=255) cGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAAc < 1:37737738/68‑1 (MQ=255) gCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAAcc > 1:10047492/1‑68 (MQ=255) tGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCa > 1:16411291/1‑67 (MQ=255) tttGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGc < 1:11962689/68‑1 (MQ=255) tttGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGc < 1:25336546/68‑1 (MQ=255) tttGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGc < 1:31091300/68‑1 (MQ=255) ggctggcGATAAGCTTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGc < 1:18013996/68‑1 (MQ=255) ggctggcGATAAGATAAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGc < 1:19973112/68‑1 (MQ=255) gctggcGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCg > 1:9751451/1‑68 (MQ=255) gctggcGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGCCTGCg > 1:14400014/1‑68 (MQ=255) cGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGgaga < 1:3633274/67‑1 (MQ=255) cGATAAGATTAACCCCCGGcccccaaattcagcgtggctatggtggttgggtattgacgatgcgttgt > 1:25987826‑M2/1‑19 (MQ=255) gATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGagag < 1:23943327/67‑1 (MQ=255) gATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGagag < 1:28420008/67‑1 (MQ=255) gATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGagag < 1:3594591/67‑1 (MQ=255) gATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGc < 1:31344772/68‑1 (MQ=255) gATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGc < 1:16047289/68‑1 (MQ=255) gATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGc < 1:2137573/68‑1 (MQ=255) gATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGc < 1:36882458/68‑1 (MQ=255) tAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGcc < 1:22910745/67‑1 (MQ=255) aGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGt < 1:3192103/68‑1 (MQ=255) aGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGt > 1:14639027/1‑68 (MQ=255) aGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGt < 1:16807722/68‑1 (MQ=255) aGATTAACCCGCGGCAGCCAGGACGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGt > 1:6817691/1‑68 (MQ=255) aTTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGGaa > 1:26758671/1‑68 (MQ=255) ttAACCCGCGGCAGCCAGGGCGTATCGAACTAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTaa < 1:29390157/67‑1 (MQ=255) ttAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTaa > 1:26229640/1‑67 (MQ=255) ttAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAAt < 1:14051803/68‑1 (MQ=255) ttAACCCGCGACAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTa < 1:8540806/66‑1 (MQ=255) cccccgcGGcacccaaattcagcggggctatggtggttgggtattgacgatgcgttgtctgggacatg > 1:38904920‑M2/3‑9 (MQ=255) aaCCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCa < 1:9567355/68‑1 (MQ=255) cccGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCaa > 1:4582793/1‑67 (MQ=255) cccGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCaa > 1:482922/1‑67 (MQ=255) cccGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCaa > 1:29745411/1‑67 (MQ=255) ccGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCAAcc < 1:24316120/68‑1 (MQ=255) ccGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCAAcc > 1:26533306/1‑68 (MQ=255) ccGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCAAcc > 1:33629128/1‑68 (MQ=255) ccGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCAAcc > 1:7663149/1‑68 (MQ=255) ccGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCAAcc > 1:19063805/1‑68 (MQ=255) ccGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCAAcc > 1:20510381/1‑68 (MQ=255) ggCAGCCAGGGCGTATCGAAATAAACCGCTTCATCGAGCGGCTGCGGAGAGCCGGTAATCAACCAGa < 1:216881/67‑1 (MQ=255) ggCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGat > 1:38349646/1‑68 (MQ=255) ggCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGa < 1:12470145/67‑1 (MQ=255) ggCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGa < 1:2863029/67‑1 (MQ=255) ggCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGa < 1:27325921/67‑1 (MQ=255) gCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGata > 1:22350636/1‑68 (MQ=255) | AACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATA > CP009273/2691435‑2691568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |