| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2845465 = | 326 (0.690) | 26 (0.060) | 12/96 | NT | 7.5% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 366 (0.910) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
Only 100 of 539 total aligned reads displayed.
CGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCG > CP009273/2845458‑2845588 | cctgttccggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgg < 1:22423777‑M2/1‑1 (MQ=255)cctgttccggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgg < 1:32817953‑M2/1‑1 (MQ=255)cctgttccggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgg < 1:22586848‑M2/1‑1 (MQ=255)cctgttccggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgg < 1:1288402‑M2/1‑1 (MQ=255)cctgttccggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgg < 1:30672495‑M2/1‑1 (MQ=255)cctgtcccggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgg < 1:7173066‑M2/1‑1 (MQ=255) aTGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAAc > 1:14807176/1‑68 (MQ=255) tGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACa > 1:31103545/1‑68 (MQ=255) tccggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgGAACa < 1:28690055‑M2/5‑1 (MQ=255) tccggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgGAACAg < 1:1081206‑M2/6‑1 (MQ=255) tcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:36555019‑M1/66‑1 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:11368696/68‑1 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:23539933/68‑1 (MQ=255) cCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAgg < 1:6598082‑M1/67‑1 (MQ=255) CGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAgg > 1:12209657‑M1/1‑67 (MQ=255) CGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGt > 1:36169720‑M1/1‑68 (MQ=255) CGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGt > 1:16610112‑M1/1‑68 (MQ=255) GGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTg < 1:21499009‑M1/68‑1 (MQ=255) CGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGAt < 1:5736724‑M1/68‑1 (MQ=255) CGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGAt < 1:33661942‑M1/68‑1 (MQ=255) GCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGAt > 1:4999260‑M1/1‑67 (MQ=255) tgttgtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAg < 1:25471780/67‑1 (MQ=255) tgttgtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAg < 1:37596227/67‑1 (MQ=255) gatattcatcaacaaaacgcattatttttcctcgccataccacagcgcgccgGAACAGGTGATGCAg < 1:34496389‑M2/15‑1 (MQ=255) gatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgGAACAGGTGATGCAg < 1:38703871‑M2/15‑1 (MQ=255) gttgtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGtt < 1:11562429/68‑1 (MQ=255) gttgtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGtt < 1:11111270/68‑1 (MQ=255) tgtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTaa > 1:32686411/1‑68 (MQ=255) aTGGTGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:35509388/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAAtt < 1:5393611/67‑1 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:26809144/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:26663293/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:27788350/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:17659016/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:1057498/1‑68 (MQ=255) atcaacaaaacgcattatttttcctcgccatacaacagcgcgccgGAACAGGTGATGCAGTTAATTGa < 1:9368789‑M2/23‑1 (MQ=255) ggCGAGTAAAAATAATGAGTATTGTTGAAGAAAATAGCGCGCCGGAACAGTTGATCCAGTTAATTGa > 1:6231013/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:30415606/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:29228429/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:19102805/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:13364634/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:19444487/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:27617966/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:27068778/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:30280723/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:12744870/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:4840530/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:205054/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:3246260/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:17346723/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:7766123/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:4364156/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:8887239/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:15959691/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGAGCCGGAACAGGTGATGAAGTTAATTGa > 1:29057755/1‑67 (MQ=255) aaaaTAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTgc < 1:37023819/67‑1 (MQ=255) aaaaTAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTgc < 1:4654125/67‑1 (MQ=255) aaaaTAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTgc < 1:28364628/67‑1 (MQ=255) ataatGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGa > 1:14321419/1‑68 (MQ=255) taatGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGaa < 1:28054542/68‑1 (MQ=255) aatGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAAc > 1:22967459/1‑68 (MQ=255) aatGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAAc > 1:24667103/1‑68 (MQ=255) tGCGTTTTGTTTATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGt < 1:33974401/68‑1 (MQ=255) tGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGt < 1:36839344/68‑1 (MQ=255) tGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGt < 1:18405069/68‑1 (MQ=255) cGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGt > 1:6363087/1‑66 (MQ=255) gTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGc < 1:25071947/67‑1 (MQ=255) gTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCt > 1:22093862/1‑68 (MQ=255) gTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCt < 1:36321714/68‑1 (MQ=255) gTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCt > 1:38335797/1‑68 (MQ=255) gTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCt < 1:24282528/68‑1 (MQ=255) gTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCt < 1:26170114/68‑1 (MQ=255) gTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGGTAATTGAGCATCTGCGCGAACGTGCt < 1:21041614/68‑1 (MQ=255) tttGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTc < 1:14581595/68‑1 (MQ=255) gttgATGACTATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTCCGCGAACGTGCTTcaca < 1:17217358/68‑1 (MQ=255) gttgATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTcaca < 1:13718446/68‑1 (MQ=255) tgatgaATATCGCGCGCCGGAACAGGTGATGCAGCTAATTGAGCATCTGCGCGAACGTGCTTCACAtc < 1:11875788/68‑1 (MQ=255) gatgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtct < 1:14000585/68‑1 (MQ=255) gatgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtct < 1:15484702/68‑1 (MQ=255) tgaCTATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:3335007/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGCTGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:6973668/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:23922374/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:16050830/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:31432352/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:18642874/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:20200910/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:19898572/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctc > 1:18152919/1‑67 (MQ=255) atCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTac > 1:29846945/1‑68 (MQ=255) atCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTac > 1:10014030/1‑68 (MQ=255) atCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTac > 1:7502900/1‑68 (MQ=255) atCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTac > 1:31759169/1‑68 (MQ=255) atCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTac > 1:3504097/1‑68 (MQ=255) cgcgcgCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTaca > 1:15179170/1‑67 (MQ=255) gcgccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACAccgc < 1:29999123‑M2/62‑1 (MQ=255) gcgccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACAccgc < 1:25964913‑M2/62‑1 (MQ=255) gcgccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACAccgc < 1:4200369‑M2/62‑1 (MQ=255) gcgccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACAccgc < 1:35271012‑M2/62‑1 (MQ=255) cgccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACAccgcc > 1:8508588‑M2/6‑68 (MQ=255) gccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACAccgccg < 1:23329826‑M2/64‑1 (MQ=255) | CGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCG > CP009273/2845458‑2845588 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |