Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 246565 247227 663 169 [152] [153] 267 lafU pseudogene, lateral flagellar motor protein fragment

Only 100 of 169 total aligned reads displayed.

AGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCTGCA  >  CP009273/246498‑246599
                                                                  |                                   
aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:34421638/67‑1 (MQ=255)
aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:23252175/67‑1 (MQ=255)
aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:26083985/67‑1 (MQ=255)
aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:30448096/67‑1 (MQ=255)
aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:31748326/67‑1 (MQ=255)
aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:16435961/67‑1 (MQ=255)
aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:36926875/67‑1 (MQ=255)
aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:11101177/67‑1 (MQ=255)
aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:5791279/67‑1 (MQ=255)
aGAAACCTCGGAAATACGCTCGGCCACTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:31776599/67‑1 (MQ=255)
   aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTaaa                                  <  1:3301833/67‑1 (MQ=255)
   aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTaa                                   <  1:37079211/66‑1 (MQ=255)
   aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTa                                    <  1:7919050/65‑1 (MQ=255)
   aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:14293726/68‑1 (MQ=255)
    aCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 >  1:36909073/1‑67 (MQ=255)
       tCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGa                             <  1:22150021/68‑1 (MQ=255)
       tCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTATCAACAGCGTCAGTAAATCCGa                             <  1:21556454/68‑1 (MQ=255)
        cGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAg                            <  1:35205702/68‑1 (MQ=255)
         ggAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGc                           <  1:28207479/68‑1 (MQ=255)
           aactACGCGCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:19843917/64‑1 (MQ=255)
           aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:34368159/67‑1 (MQ=255)
           aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:8011570/67‑1 (MQ=255)
            aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGt                         <  1:14145758/67‑1 (MQ=255)
            aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        >  1:36754437/1‑68 (MQ=255)
            aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        >  1:24615380/1‑68 (MQ=255)
            aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        >  1:18224565/1‑68 (MQ=255)
            aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        >  1:36510283/1‑68 (MQ=255)
               aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     <  1:5280275/68‑1 (MQ=255)
               aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     >  1:29427323/1‑68 (MQ=255)
               aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     <  1:33166831/68‑1 (MQ=255)
               aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     <  1:24726531/68‑1 (MQ=255)
               aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     >  1:13923152/1‑68 (MQ=255)
                cGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAg                    <  1:138125/68‑1 (MQ=255)
                cGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAg                    <  1:29031697/68‑1 (MQ=255)
                cGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAg                    <  1:37372369/68‑1 (MQ=255)
                 gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:32510818/1‑68 (MQ=255)
                 gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:7373907/1‑68 (MQ=255)
                 gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:32615545/1‑68 (MQ=255)
                 gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:2765842/1‑68 (MQ=255)
                 gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:2232095/1‑68 (MQ=255)
                 gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGGCAGTAAATCCGAGCGTGAAAGc                   <  1:31422450/68‑1 (MQ=255)
                   tCGGCCCCTTTGGTTACGACAATATAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:21335592/67‑1 (MQ=255)
                   tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:18304593/67‑1 (MQ=255)
                   tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:17474306/67‑1 (MQ=255)
                   tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:17701649/67‑1 (MQ=255)
                   tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:20118820/67‑1 (MQ=255)
                   tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:27884158/67‑1 (MQ=255)
                   tCGGCCCCTTTCGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:19155172/67‑1 (MQ=255)
                    cGGCCCCTTTGGTTACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCAtt                <  1:12877148/68‑1 (MQ=255)
                       ccccTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATc             >  1:15986610/1‑68 (MQ=255)
                        cccTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATc             <  1:7416744/67‑1 (MQ=255)
                           tttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgcc          >  1:6899254/1‑67 (MQ=255)
                            ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:12519439/68‑1 (MQ=255)
                            ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:10138783/68‑1 (MQ=255)
                            ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:33889298/68‑1 (MQ=255)
                            ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:11861878/68‑1 (MQ=255)
                            ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:4397624/68‑1 (MQ=255)
                            ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:38886594/68‑1 (MQ=255)
                            ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:33528990/68‑1 (MQ=255)
                            ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:14337661/68‑1 (MQ=255)
                            ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:26621891/68‑1 (MQ=255)
                            ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:23069757/68‑1 (MQ=255)
                            ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:22756864/68‑1 (MQ=255)
                            ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:17423866/68‑1 (MQ=255)
                             tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:5656261/1‑67 (MQ=255)
                             tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:35430211/1‑67 (MQ=255)
                             tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:13621047/1‑67 (MQ=255)
                             tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:27120337/1‑67 (MQ=255)
                             tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:2502398/1‑67 (MQ=255)
                             tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:24112257/1‑67 (MQ=255)
                              ggTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:19142348/1‑66 (MQ=255)
                                tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    >  1:9519034/1‑67 (MQ=255)
                                tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    >  1:30143272/1‑67 (MQ=255)
                                tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:19064138/67‑1 (MQ=255)
                                tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:29995452/67‑1 (MQ=255)
                                 gacgacAATACAGTTGATTGGCAACAGCGGCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:38721888/68‑3 (MQ=255)
                                 gacgacAATAACGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:3458689/68‑3 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:25170508/68‑3 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:11487832/68‑3 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:11726911/68‑3 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:27219275/68‑3 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:20968941/68‑3 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   >  1:20535568/1‑66 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:29668412/68‑3 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:477758/68‑3 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:37839488/68‑3 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:37318291/68‑3 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:19988172/68‑3 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:15440813/68‑3 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:36289003/68‑3 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:34257137/68‑3 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   >  1:16309085/1‑66 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:34722666/68‑3 (MQ=255)
                                 gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    <  1:39009860/67‑2 (MQ=255)
                                 gacgacAATAAAGTTGACTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:15628093/68‑3 (MQ=255)
                                   cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:1303130/67‑4 (MQ=255)
                                   cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:3043925/67‑4 (MQ=255)
                                   cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:19452403/67‑4 (MQ=255)
                                   cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:2563510/67‑4 (MQ=255)
                                   cgacAAAAAAGTTTATTGTATACAGCGTCAGTTAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:35146175/67‑4 (MQ=255)
                                                                  |                                   
AGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCTGCA  >  CP009273/246498‑246599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑