New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1092557	NA (NA)	8 (0.020) +GC	6/108	NT	NA	intergenic (+272/+464)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	CP009273	= 1092559	NA (NA)					intergenic (+274/+462)	ycdU/serX	putative inner membrane protein/tRNA‑Ser

TGCGTTCACGGTCTGTCCAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1092533‑1092557 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGT  <  CP009273/1092559‑1092498                          ||                                                               TGCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGCCAGACCGTGAACGGAGTGAGGGGGGTGC                        >  1:12222168/1‑67   CGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGCCAGCCCGTGAACGCAGTGAGCGGGCTGCCC                      >  1:3024652/1‑67   CGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCC                      >  1:27010214/1‑67       CACGGTCTGTCCAACTGGCGCCAGCCAGGTGGGCAGCCCGTGAACGCAGTGAGCGGGCTGCCCGCAGG                 >  1:2215139/1‑68         CGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGC               >  1:6647398/1‑68           GTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGA             >  1:1510824/1‑68            TCTGTCCAACTGGCGCCAGCCCGTTGGACCGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGA             >  1:23664182/1‑67            TCTGTCCAACTGGCGCCAGCCAGTTGGACAGCCCGTGAACGCAGTGAGCGGGCTGCCCGCCGGGCGA             >  1:3991296/1‑67                    cCTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGA    <  1:22111918/67‑1                     CTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG   >  1:10098392/1‑68                      TGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGCGCGAAGCGAG   >  1:1699753/1‑67                      TGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGT  <  1:19483142/68‑1                          ||                                                               TGCGTTCACGGTCTGTCCAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1092533‑1092557 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGT  <  CP009273/1092559‑1092498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.