| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1092557 | NA (NA) | 8 (0.020) +GC |
6/108 | NT | NA | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1092559 | NA (NA) | intergenic (+274/+462) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
Only 100 of 356 total aligned reads displayed.
GCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAG > CP009273/1092507‑1092626 | gctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGAc < 1:6930106/68‑1 (MQ=31) ctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGAc > 1:9389342/1‑67 (MQ=31) ctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGAc > 1:17151885/1‑67 (MQ=31) ctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGAc > 1:7536681/1‑67 (MQ=31) tcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGAcc < 1:11533554/67‑1 (MQ=33) tcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGGCTGT‑CCAACTGGCTGTCGCCAGTTGTCGAccc < 1:27606370/68‑1 (MQ=25) ccTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCgg > 1:19621911/1‑68 (MQ=35) ccTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCgg < 1:4776722/68‑1 (MQ=35) ccTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCg < 1:3265206/67‑1 (MQ=35) tGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTc > 1:9791373/1‑68 (MQ=35) tGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTc > 1:21241474/1‑68 (MQ=35) gggCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg < 1:22258613/68‑1 (MQ=35) gggCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg > 1:21100281/1‑68 (MQ=35) gggCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg < 1:7953990/68‑1 (MQ=35) ggCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg > 1:17639467/1‑67 (MQ=35) ggCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg > 1:15030937/1‑67 (MQ=35) ggCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg > 1:11163294/1‑67 (MQ=35) ggCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg > 1:8506392/1‑67 (MQ=35) aGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCt < 1:28057566/67‑1 (MQ=35) ccGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCtt < 1:20852800/65‑1 (MQ=35) ccGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTtctc > 1:6190853/1‑68 (MQ=35) ccGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTtc < 1:8238900/66‑1 (MQ=35) ctgtGCGTTGACGGTGTGT‑CGACGTTGCGGTCGCCAGTTGTCGTCCCCCGGTCGGGTCTTCTCTTccc < 1:13547837/65‑1 (MQ=2) caatGCGTTCACGGTCTGG‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccc < 1:25705753/65‑1 (MQ=255) cACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTGTCATcc > 1:18552058/1‑67 (MQ=25) cACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccc < 1:21920187/68‑1 (MQ=35) cACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccc < 1:2832926/68‑1 (MQ=35) cACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccc < 1:2692716/68‑1 (MQ=35) cACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccc < 1:27686759/68‑1 (MQ=35) cACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccc < 1:6402983/68‑1 (MQ=35) cACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccc < 1:18612734/68‑1 (MQ=35) cACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccc < 1:28998215/68‑1 (MQ=35) cACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccc < 1:8020686/68‑1 (MQ=35) cACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccc < 1:1335627/68‑1 (MQ=35) cACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATcc > 1:28717196/1‑67 (MQ=35) cACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATcc > 1:2485435/1‑67 (MQ=35) cACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATcc > 1:21841666/1‑67 (MQ=35) cACTGCGTTCACGGGCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccc < 1:16689680/68‑1 (MQ=255) aCTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccc < 1:2325764/67‑1 (MQ=35) aCTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccc > 1:1576211/1‑67 (MQ=35) gCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCg > 1:5195141/1‑68 (MQ=35) gCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCg > 1:5884143/1‑68 (MQ=35) cGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCgg > 1:11040524/1‑68 (MQ=35) gTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCgg < 1:15968186/67‑1 (MQ=35) gTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCgg < 1:2146677/67‑1 (MQ=35) gTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCgg < 1:26139665/67‑1 (MQ=35) gTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCgg < 1:1629038/67‑1 (MQ=35) gTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCgg < 1:5431209/67‑1 (MQ=35) gTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCgg < 1:1847075/67‑1 (MQ=35) gTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCgg < 1:20316421/67‑1 (MQ=35) gTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCgg < 1:381289/67‑1 (MQ=35) gTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCgg < 1:17439604/67‑1 (MQ=35) gTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCgg < 1:18431863/67‑1 (MQ=35) gTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgt < 1:14688855/68‑1 (MQ=35) gTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgt < 1:4018101/68‑1 (MQ=35) gTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgt < 1:21688063/68‑1 (MQ=35) ttaaCGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCACCGGTCGGGGCTTCTCATCACCCCGgtg > 1:11410583/4‑68 (MQ=11) tCACGGTTTTT‑CCAACTGGCTGTCGCCATTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgt < 1:11316011/68‑1 (MQ=11) tCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgt < 1:15841212/68‑1 (MQ=35) tCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgt < 1:25103533/68‑1 (MQ=35) tCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgt < 1:25500246/68‑1 (MQ=35) tCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgt < 1:71067/68‑1 (MQ=35) tCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgt < 1:9255472/68‑1 (MQ=35) tCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtg < 1:1273845/67‑1 (MQ=35) cACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgtg > 1:23098297/1‑68 (MQ=35) cACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgtg > 1:18137574/1‑68 (MQ=35) cACGGGCTGTCCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgt < 1:4636562/68‑1 (MQ=11) aCGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgtgt < 1:16167316/68‑1 (MQ=35) aCGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgtgt < 1:24318405/68‑1 (MQ=35) aCGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgtgt < 1:2397857/68‑1 (MQ=35) aCGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgtgt < 1:23668794/68‑1 (MQ=35) aCGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgtgt < 1:12300382/68‑1 (MQ=35) aCGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgtgt < 1:3578676/68‑1 (MQ=35) aCGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgtgt < 1:5332699/68‑1 (MQ=35) aCGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgtgt < 1:8474746/68‑1 (MQ=35) cGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgtgt > 1:22847266/1‑67 (MQ=35) cGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCAAAACCCACAGgtgtgt > 1:18899300/1‑67 (MQ=11) ggTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGc < 1:29105297/68‑1 (MQ=35) gTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCa > 1:7411408/1‑68 (MQ=35) gTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCa > 1:22034236/1‑68 (MQ=35) gTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCa > 1:23462832/1‑68 (MQ=35) tCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCa < 1:26750873/67‑1 (MQ=35) tCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATATCCCCGGGGTGTGCaa > 1:10605552/1‑68 (MQ=11) tCTGT‑CCAACTGGCTGTCGCCAGCTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTTTGGGctt > 1:15584887/1‑66 (MQ=11) cTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAAt < 1:11922097/68‑1 (MQ=35) ccAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATagac > 1:13146762/1‑68 (MQ=25) cAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCaa > 1:10070238/1‑62 (MQ=35) cAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATAGACg > 1:20574460/1‑68 (MQ=25) cAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACg < 1:303553/68‑1 (MQ=40) aCTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATAGACGaa > 1:26388919/1‑68 (MQ=25) aCTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaa < 1:2009991/68‑1 (MQ=40) aCTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATAAACGaa > 1:14527339/1‑68 (MQ=25) tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCaa > 1:19329410/1‑58 (MQ=35) tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaa > 1:7747772/1‑68 (MQ=40) tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaa > 1:5568035/1‑68 (MQ=40) tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaa > 1:21622049/1‑68 (MQ=40) tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaa > 1:24682170/1‑68 (MQ=40) gCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATAAACGaaaaaa > 1:5015539/1‑68 (MQ=25) gTCTCCAGTTGTGGTCCCGGTGTCGTGGATTCTCAACACCCCGGTGTGTGCAATACACGAAAAAAAAg < 1:10925091/68‑1 (MQ=9) gTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAg < 1:10547488/68‑1 (MQ=40) | GCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGT‑CCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAG > CP009273/1092507‑1092626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |