| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161581 | 203 (0.570) | 16 (0.050) +A |
11/110 | NT | 8.8% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162078 = | 136 (0.390) | coding (538/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1161518‑1161581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTT > CP009273/1162078‑1162141 | TTAATAAATTTTAGGGGGTCACGTTGACTACGCCATTGAAAATGATTGTGATTGTCGGCGGCGGA > 1:17851986/1‑65TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCG > 1:20109252/1‑68 AAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGACGGG > 1:28941948/1‑68 AAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCTAGGGG > 1:21408277/1‑68 AATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGg > 1:1679815/1‑67 AGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGGCGGGTGTAGAA > 1:9742413/1‑68 GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTACGGGTGTAGA > 1:16458081/1‑66 GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGC‑‑‑GCGGCGGGTGTAGAACTaa > 1:5363661/1‑66 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAA > 1:16258460/1‑66 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTCTAGAAC > 1:6407452/1‑67 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGGGTTGAAC > 1:21694465/1‑67 GTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTGTAGAACTCTCCACTG > 1:2197812/1‑68 ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGCCGGGTGTAGAACTCTCAACAGAATT > 1:19773797/1‑68 CTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGACGGGTGTTGA > 1:23428515/1‑52 CCATTAAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTGTAGAACTCTCCGCTCAATTGCACA > 1:19972773/1‑67 AAGATTGTGATTGTCGGCGGCGGTGCGACGGGTGTAGAA > 1:14133719/1‑39 AAGATTGTGATTGTCGGCGGCGGAGCGCCGGGTGTAGAACTCTCCGCTGAAATGCACAACGAGGTCAA > 1:27987330/1‑68 ATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCTGAGTTGCGCAAGGCGGTCTAGC > 1:11736431/1‑67 GGAGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTT < 1:22487280/67‑1 | TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1161518‑1161581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTT > CP009273/1162078‑1162141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |