| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161581 | 203 (0.570) | 16 (0.050) +A |
11/110 | NT | 8.8% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162078 = | 136 (0.390) | coding (538/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
Only 100 of 229 total aligned reads displayed.
TTCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTACA > CP009273/1162012‑1162144 | ttCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGgcgc > 1:7620475/1‑68 (MQ=255)ttCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGgcgc > 1:7372640/1‑68 (MQ=255)ttCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGgcgc > 1:338153/1‑68 (MQ=255) ttaataaatttaagggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcgggGCg > 1:20109252‑M2/66‑68 (MQ=255) aaatttaagggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggaGCTAgggg > 1:21408277‑M2/61‑68 (MQ=255) aatttaagggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcgggGCGAcgggg > 1:1679815‑M2/60‑67 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt < 1:6021937/68‑1 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt < 1:543063/68‑1 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt < 1:29247306/68‑1 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt < 1:13066799/68‑1 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt < 1:23576989/68‑1 (MQ=255) aTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtg > 1:22026731/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:7560246/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:12171092/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAAGGGCAAAGGGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt < 1:24846639/68‑1 (MQ=255) cTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAg > 1:15080106/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:22342806/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:10177537/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:7182061/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:15229879/1‑68 (MQ=255) ggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggaGCGACGGGTCTAGAAc > 1:6407452‑M2/52‑67 (MQ=255) ggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggaGCGACGGGGGTTGAAc > 1:21694465‑M2/52‑67 (MQ=255) ggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggCGCGACGGGTGTTGAAc > 1:27207972‑M2/51‑67 (MQ=255) cAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAActct < 1:5817451/68‑1 (MQ=255) aCCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc < 1:14871416/68‑1 (MQ=255) aCCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc < 1:7510225/68‑1 (MQ=255) aCCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc < 1:2519179/68‑1 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGCCGGGTGTAGAACTCTcc > 1:9817553/1‑67 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:8651625/1‑67 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:14123461/1‑67 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:5113455/1‑67 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCg > 1:23333677/1‑68 (MQ=255) gttgactacgccattgaaaaagattgtgattgtcggcggcggaGCGACGGGTGTAGAACTCTCCACTg > 1:2197812‑M2/44‑68 (MQ=255) tgactacgccattgaaaaagattgtgattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGa < 1:11992025‑M2/27‑1 (MQ=255) gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa < 1:22943874/67‑1 (MQ=255) gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa < 1:15575229/67‑1 (MQ=255) cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGCCGGGTGTAGAACTCTCCGCTGAAt > 1:23493457/1‑68 (MQ=255) cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt > 1:24557071/1‑68 (MQ=255) cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt > 1:19558016/1‑68 (MQ=255) cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt > 1:13286289/1‑68 (MQ=255) cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt > 1:26109718/1‑68 (MQ=255) gcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAtt > 1:11716780/1‑68 (MQ=255) gcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAtt > 1:16182946/1‑68 (MQ=255) actacgccattgaaaaagattgtgattgtcggcggcgggGCGCCGGGTGTAGAACTCTCAACAGAAtt > 1:19773797‑M2/40‑68 (MQ=255) gAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGTGTGTAGAACTCTCCGCTGAATTGc < 1:26784298/68‑1 (MQ=255) aTGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGcac > 1:27640248/1‑68 (MQ=255) ccattaaaaaagattgtgattgtcggcggcggaGCGACGGGTGTAGAACTCTCCGCTCAATTGcaca > 1:19972773‑M2/34‑67 (MQ=255) aaGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAAcgcg < 1:20480587/68‑1 (MQ=255) aGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCgg > 1:18194917/1‑68 (MQ=255) tGAACATTGCGATTGTCGGCGGCGGCGCGCCGGGTGTAGAACTCTCCGCTGAATTGCCCACCGCGGTc > 1:10887987/1‑68 (MQ=255) tGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc > 1:477658/1‑68 (MQ=255) tGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc > 1:21845066/1‑68 (MQ=255) gAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc < 1:20598176/67‑1 (MQ=255) aagattgtgattgtcggcggcggaGCGCCGGGTGTAGAACTCTCCGCTGAAATGCACAACGAGGTCaa > 1:27987330‑M2/25‑68 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAGTCTCCGCTGAATTGCACAACGCGGTCaa > 1:2667583/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACACCGCGGTCaa > 1:11194292/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:14737107/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:15345410/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:8971451/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:18661163/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAg < 1:14333255/68‑1 (MQ=255) aTTGTGATTGTCGGCGGCGGTGCGCCGGGTCTAGAACTCGCCGCACAAATGCCCAACGAGGTCAAGCa > 1:12479471/1‑68 (MQ=16) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGc > 1:10335432/1‑67 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:16110435/1‑68 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:17165550/1‑68 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:10013786/1‑68 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa < 1:27567329/68‑1 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGGCAAGc > 1:17550260/1‑67 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGGAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:2742974/1‑68 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:25973360/1‑67 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:421520/1‑67 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:6228325/1‑67 (MQ=255) gCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:17121255/1‑65 (MQ=255) gCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACt < 1:16049874/68‑1 (MQ=255) gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc < 1:8199934‑M2/53‑1 (MQ=255) gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc < 1:28817501‑M2/53‑1 (MQ=255) gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc < 1:3441374‑M2/53‑1 (MQ=255) tgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca < 1:24021548‑M2/56‑1 (MQ=255) tgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca < 1:3974247‑M2/56‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:9315863‑M2/58‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:16440926‑M2/58‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:24358941‑M2/58‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:13628558‑M2/58‑1 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:5988664‑M2/62‑1 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:8740504‑M2/62‑1 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:786235‑M2/62‑1 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:19209847‑M2/62‑1 (MQ=255) gcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt > 1:14161196‑M2/5‑68 (MQ=255) cggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt < 1:5920942‑M2/64‑1 (MQ=255) ggaGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt < 1:22487280‑M2/64‑1 (MQ=255) ggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt < 1:11499136‑M2/65‑1 (MQ=255) ggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt < 1:15387442‑M2/65‑1 (MQ=255) ggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt < 1:1906431‑M2/65‑1 (MQ=255) ggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt < 1:17902785‑M2/65‑1 (MQ=255) ggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt < 1:26415544‑M2/65‑1 (MQ=255) ggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTa < 1:10558564‑M2/66‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:3537447/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:1391892/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:980206/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTACa > 1:22193637/1‑68 (MQ=255) | TTCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTACA > CP009273/1162012‑1162144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |