New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1505831 =231 (0.650)11 (0.040) 8/94 NT 5.3% intergenic (+165/‑80) ydcR/ydcS putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog
?CP009273 1505880 = 200 (0.670)intergenic (+214/‑31) ydcR/ydcS putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog

Only 100 of 137 total aligned reads displayed.

TTACTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1505904‑1505831
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCG  >  CP009273/1505880‑1505946
                                                                                                                                             
TTACTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACG                                                                           <  1:21685677/68‑1
TTACTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACG                                                                           <  1:23947322/68‑1
 TACTCCTGTCGTAATTAATTGATCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGG                                                                          <  1:23839080/68‑1
  ACTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGC                                                                         <  1:26414820/68‑1
   CTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:26286890/1‑68
   CTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:1113876/1‑68
   CTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        <  1:25764367/68‑1
   CTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:28473624/1‑68
   CTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:24747418/1‑68
   CTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:16884855/1‑68
    taCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATATCCTTGTTTAACCATAGACGGCG                                                                        >  1:15157724/3‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:2314891/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:23508913/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:19454717/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:23090216/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:22527650/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:21942753/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:21807562/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:21604376/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:19510004/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:1010263/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:26203894/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:27221607/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:3949586/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:4043761/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:418968/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:5189535/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:5222145/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:53091/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:6057351/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:6460016/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:6852859/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:7321896/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:787142/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:8855511/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:8977675/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:9607869/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:19212103/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:15215466/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:15167111/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:14647580/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:14343147/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:13727178/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:13560995/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:16767989/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:16963089/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:13125569/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:12818427/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:1891731/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:10460709/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:12464543/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:12045888/1‑67
    TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:11159097/1‑67
     CCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGC                                                                      <  1:1966314/68‑1
     CCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGC                                                                      <  1:7995055/68‑1
     CCTGGCGTAATTAATTGTTCAGCCGCCGGGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGC                                                                      <  1:17958902/68‑1
      CTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCT                                                                     <  1:26161616/68‑1
      CTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCT                                                                     <  1:8943345/68‑1
           GTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCTGAACA                                                                <  1:16222552/68‑1
           GTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCTGAACA                                                                <  1:16020051/68‑1
           GTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCTGAACA                                                                <  1:21685152/68‑1
                TAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCTGAACAATTAA                                                           <  1:12841220/68‑1
                TAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCTGAACAATTAA                                                           <  1:26929839/68‑1
                     GTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCTGAACAATTAATTACG                                                      <  1:17889799/68‑1
                            CGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCTGAACAATTAATTACGACAGGA                                                <  1:21908585/67‑1
                             GCCGTGCCGTAAAAATAACTCCTTGTTTAACCATAGCCGGCGGCTGAACAATTAATTACGACAGGAGT                                              <  1:6221751/68‑1
                                  GCCGTAAAAATATCTCCTTGTTTAACCATAGACTGCGGCTGAACAATTAATTACGACAGGAGTAAGA                                          <  1:1846822/67‑1
                                  GCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCTGAACAATTAATTACGACAGGAGTAAGA                                          <  1:19110390/67‑1
                                         AAATATCTCCTTGTTTAACCATAGCCGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGA                                  <  1:18647073/68‑1
                                          AATATCTCCTTGTTTAACCATAGACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATCAG                                 <  1:27059378/68‑1
                                                                 cCGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:26710638/66‑1
                                                                 ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:26132768/67‑1
                                                                 ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:20016885/67‑1
                                                                 ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:27794302/67‑1
                                                                 ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:20239969/67‑1
                                                                 ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:6751862/67‑1
                                                                 ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:2148022/67‑1
                                                                  CGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCT         <  1:14703238/68‑1
                                                                  CGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCT         <  1:2842586/68‑1
                                                                   GGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTG        <  1:23010585/68‑1
                                                                   GGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTG        <  1:12605843/68‑1
                                                                   GGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTG        <  1:13623317/68‑1
                                                                     CGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGT       <  1:21167838/67‑1
                                                                     CGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGT       <  1:17943958/67‑1
                                                                      GGCTGAACATTTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTTTG      <  1:919214/67‑1
                                                                      GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCACGACATTTGCCCGCAGCAGCCTGTG      <  1:17530636/67‑1
                                                                      GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:11057728/67‑1
                                                                      GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:10085581/67‑1
                                                                      GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:17705641/67‑1
                                                                      GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:13177084/67‑1
                                                                      GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:24003219/67‑1
                                                                      GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:29215764/67‑1
                                                                      GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:290408/67‑1
                                                                      GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:24959047/67‑1
                                                                      GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:28242366/67‑1
                                                                      GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:27391499/67‑1
                                                                      GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:25490355/67‑1
                                                                      GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:25729600/67‑1
                                                                         TGAACAATTAATTACGACCGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGC   <  1:16086977/67‑1
                                                                         TGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCG  <  1:20548069/68‑1
                                                                                                                                             
TTACTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1505904‑1505831
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCG  >  CP009273/1505880‑1505946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.