| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1505831 = | 231 (0.650) | 11 (0.040) | 8/94 | NT | 5.3% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 200 (0.670) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
Only 100 of 381 total aligned reads displayed.
GGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCG > CP009273/1505813‑1505946 | gCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGa > 1:24395146/1‑68 (MQ=255) cgtaattaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAAc < 1:17889799‑M1/53‑1 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACa < 1:1840162/67‑1 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:28984195/1‑68 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:23387296/1‑68 (MQ=255) gtgtGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatt > 1:21693198/1‑68 (MQ=255) gtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaa < 1:11533113/68‑1 (MQ=255) gtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaa < 1:2765517/68‑1 (MQ=255) gCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaat < 1:3211648/67‑1 (MQ=255) tgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTAc < 1:21685152‑M1/63‑1 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:16238542/68‑1 (MQ=255) gCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGa < 1:10211235/68‑1 (MQ=255) aaGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACa > 1:3572682/1‑68 (MQ=255) aaGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACa > 1:20660085/1‑68 (MQ=255) GCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAgg < 1:7995055‑M1/68‑1 (MQ=255) CCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa < 1:8791841‑M1/68‑1 (MQ=255) CCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa < 1:10807935‑M1/68‑1 (MQ=255) cgccgtgccgtaaaaatatctccttgtttaaccatagacggcggctGAACAATTAATTACGACAGGAg < 1:26753286‑M2/22‑1 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:4043761‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:418968‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:19510004‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:21807562‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:21942753‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:23090216‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:26285232‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:26203894‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:10460709‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:9607869‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:12045888‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:12818427‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:7321896‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:14343147‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:53091‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:14647580‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAg > 1:24747418‑M1/1‑68 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAg > 1:1113876‑M1/1‑68 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAg > 1:6677981‑M1/1‑68 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAg > 1:16884855‑M1/1‑68 (MQ=255) CGCCGTCTATGGTTAAACAACGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:13605853‑M1/1‑67 (MQ=255) CGCAGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:21572496‑M1/1‑67 (MQ=255) GCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGt < 1:26414820‑M1/68‑1 (MQ=255) CCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGATCAATTAATTACGACAGGAGTa < 1:23839080‑M1/68‑1 (MQ=255) gccgtaaaaatatctccttgtttaaccatagacggcggctGAACAATTAATTACGACAGGAGTAAGa < 1:19110390‑M2/27‑1 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGa < 1:28760269/67‑1 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGa < 1:2287822/67‑1 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGa < 1:18735185/67‑1 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGa < 1:13005146/67‑1 (MQ=255) atATGGTTAAACAATGAGATATTTTTACGGCACGGCGGCTTATCAATTAATTACGACAGGTGTAAGAc < 1:4842168/67‑1 (MQ=255) tATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGAcc < 1:3925981/68‑1 (MQ=255) tATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGAcc < 1:10032473/68‑1 (MQ=255) aTGGTTAAACAATGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:13548571/68‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:15430822/68‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:2494949/68‑1 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:9089790/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:5108614/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:28107257/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:23201903/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:6382352/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:4519868/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:23547561/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:12901235/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:22489091/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGAACTTAt > 1:15134880/1‑68 (MQ=255) tAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGa < 1:15987648/68‑1 (MQ=255) tAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGa < 1:23691537/68‑1 (MQ=255) tAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGa < 1:13922508/68‑1 (MQ=255) aaaCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAg < 1:11303520/68‑1 (MQ=255) aCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCa > 1:24442456/1‑68 (MQ=255) aCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCa > 1:8636004/1‑68 (MQ=255) cAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCaa > 1:20258722/1‑68 (MQ=255) ggAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGAc > 1:1740593/1‑68 (MQ=255) agaTATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGAc < 1:5368277/66‑1 (MQ=255) agaTATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACAt > 1:29202966/1‑68 (MQ=255) agaTATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGAAAGACAt > 1:7015830/1‑68 (MQ=255) tttttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGc > 1:25486191/1‑67 (MQ=255) ttttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGAcc < 1:16529472/47‑1 (MQ=255) ttttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGccc > 1:20961004/1‑68 (MQ=255) ttttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGccc > 1:18959979/1‑68 (MQ=255) ttttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGccc > 1:16022050/1‑68 (MQ=255) ttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgc > 1:19397257/1‑68 (MQ=255) acgtcacggcGGCTGAAGAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcag < 1:24305295/68‑1 (MQ=255) acggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGa > 1:9280807/1‑41 (MQ=255) ggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcagca > 1:7765232/1‑68 (MQ=255) ggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcagca < 1:13230084/68‑1 (MQ=255) ggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcagca > 1:6085910/1‑68 (MQ=255) ggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcagca > 1:9726698/1‑68 (MQ=255) ggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcagca > 1:22733258/1‑68 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGcagcag > 1:27809732‑M2/10‑66 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:20016885‑M2/58‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:26132768‑M2/58‑1 (MQ=255) cggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCt < 1:14703238‑M2/60‑1 (MQ=255) cggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCt < 1:2842586‑M2/60‑1 (MQ=255) ggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtg < 1:12605843‑M2/61‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCACGACATTTGCCCGCAGCAGCCtgtg < 1:17530636‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:18057216‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:27391499‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:27162456‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:25729600‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGACTATGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:5836452‑M2/63‑1 (MQ=255) tGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTgcg < 1:20548069‑M2/67‑1 (MQ=255) | GGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCG > CP009273/1505813‑1505946 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |