New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2540715214 (0.610)16 (0.050) 5/94 NT 6.4% coding (684/1425 nt) murP N‑acetylmuramic acid permease, EIIBC component, PTS system
?CP009273 = 2540730 289 (0.980)coding (699/1425 nt) murP N‑acetylmuramic acid permease, EIIBC component, PTS system

Only 100 of 208 total aligned reads displayed.

AACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2540641‑2540715
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcaatCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  CP009273/2540730‑2540664
                                                                                                                                              
AACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGC                                                                             >  1:24572634/1‑67
 ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:14646786/1‑68
 ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:14062395/1‑68
 ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:25120504/1‑68
 ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:22352538/1‑68
 ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:6555640/1‑68
 ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:647195/1‑68
 ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:13709208/1‑68
  CCCCGCAGCGCCCACCGGTTACTACGCCGGTTTTCACGATTTCTTTTGTCTGCCCATCGATCCGCGCG                                                                          <  1:22461845/68‑1
  CCCCGCAGCGACCCCCGGTTACTACGCCGGTTTTCACGATTAGGTTGGTCTGCCCCTCGCTCCGCGCG                                                                          >  1:15736862/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCCTCGATCCGCGCG                                                                          >  1:16414407/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:23431475/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:20749083/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:23106740/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:22961231/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:24602819/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:21580144/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:21176967/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:25346451/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:10359891/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:2544430/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:28247793/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:28790611/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:3286989/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:3715413/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:3775724/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:4322202/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:5076991/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:6074484/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:6426524/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:6674/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:8608955/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:8996603/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:9423040/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:10195292/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:19833870/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:13818119/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:14449366/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:13518462/68‑1
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:13057297/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:129861/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:1260324/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:12578419/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:1230530/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:16038837/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:16552666/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:17321310/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:12140023/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:18035822/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:18163520/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:18317015/68‑1
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:10789927/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:18620218/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:18750734/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:10558604/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCAATCGATCCGCGCG                                                                          >  1:24808198/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGGTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:673066/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGCTTTTCACGATTTGTTTGGTCTGCGCATCGATCCGCGCG                                                                          >  1:5252276/1‑68
    CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:6124483/68‑1
    CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:11826645/68‑1
    CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:27770882/68‑1
    CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:267647/68‑1
    CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:20370459/68‑1
    CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGGCTGCCCATCGATCCGCGCGGC                                                                        <  1:14917805/68‑1
     CGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCA                                                                       <  1:7463887/68‑1
      GCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAA                                                                      >  1:28973579/1‑68
       CAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAAT                                                                     >  1:1496840/1‑68
                           GCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGATAATATTGC                                                 <  1:25238503/68‑1
                                     ACGATTTCTTTGGCCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATC                                       <  1:24017529/68‑1
                                                GGTCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGGTAATATTGGCGGGGGGGTCGATGGGCAGA                             >  1:27176582/1‑67
                                                GGTCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGA                             >  1:22758296/1‑67
                                                  TCTGCCCATCGCTCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGGGGGTGGAGGGGCAGACCA                          >  1:7830568/1‑68
                                                  TCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGCTGGGCAGCCCA                          >  1:22920561/1‑68
                                                            GATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGT                >  1:28597513/1‑68
                                                            GATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGT                >  1:11171574/1‑68
                                                            GATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGT                >  1:3104480/1‑68
                                                             ATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTG               >  1:26078384/1‑68
                                                                   GCGTCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         <  1:7180713/68‑1
                                                                   GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:11520595/1‑68
                                                                   GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         <  1:7587428/68‑1
                                                                   GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:21253025/1‑68
                                                                   GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:15571292/1‑68
                                                                   GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         <  1:15363764/68‑1
                                                                   GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:25542217/1‑68
                                                                   GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGAT                                    >  1:26468448/1‑41
                                                                    CGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCG        >  1:21335792/1‑68
                                                                     GGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGG       <  1:14060467/68‑1
                                                                       CAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGC      <  1:28055133/67‑1
                                                                       CAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGC      <  1:2739802/67‑1
                                                                        AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    <  1:21789691/68‑1
                                                                        AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    <  1:29215434/68‑1
                                                                        AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    <  1:3327442/68‑1
                                                                        AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    <  1:24144585/68‑1
                                                                        AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    <  1:8096743/68‑1
                                                                        AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    <  1:9343355/68‑1
                                                                         ATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTA   >  1:25597881/1‑68
                                                                         ATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTA   >  1:20615174/1‑68
                                                                          TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  1:28848820/68‑1
                                                                          TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  1:25851709/68‑1
                                                                          TCAGCACGCCGATAATATTGCCGCGCGGACCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  >  1:5829560/1‑68
                                                                                                                                              
AACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2540641‑2540715
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcaatCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  CP009273/2540730‑2540664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.