| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2540715 | 214 (0.610) | 16 (0.050) | 5/94 | NT | 6.4% | coding (684/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system |
| ? | CP009273 | = 2540730 | 289 (0.980) | coding (699/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system | |||||
Only 100 of 378 total aligned reads displayed.
CAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGC > CP009273/2540648‑2540782 | cAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAAT > 1:1496840‑M1/1‑68 (MQ=255) aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:16003386/1‑68 (MQ=255) aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:6743512/1‑68 (MQ=255) aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:16570707/1‑68 (MQ=255) aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:25172609/1‑68 (MQ=255) aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:8351066/1‑68 (MQ=255) aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:7990985/1‑68 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAatat < 1:27221387/66‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:28132054/65‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:25890572/65‑1 (MQ=255) ccaccGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATc < 1:3955841/68‑1 (MQ=255) accGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCgg < 1:25690351/68‑1 (MQ=255) ccGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGc > 1:16836121/1‑68 (MQ=255) ccGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGc > 1:29058356/1‑68 (MQ=255) ttACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGt > 1:13730732/1‑66 (MQ=255) ttACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGt > 1:10859037/1‑66 (MQ=255) tactacGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGc < 1:5393455/67‑1 (MQ=255) tactacGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGc < 1:23487143/67‑1 (MQ=255) tactacGCCGGTTTTCACCATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAACATTATCGGCGTGCt < 1:6512414/68‑1 (MQ=255) cTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCGGCGCGGCAATATTATCGGCGTGCTGa < 1:27276798‑M2/68‑2 (MQ=255) cTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGa < 1:12565790‑M2/68‑2 (MQ=255) gCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATcagcacgccgataatattgc < 1:25238503‑M1/68‑21 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgc < 1:15363764‑M2/68‑9 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgc > 1:11520595‑M2/1‑60 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgc > 1:7528327‑M2/1‑60 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgc > 1:4926387‑M2/1‑60 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgacgc < 1:7180713‑M2/68‑9 (MQ=255) tttCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGt < 1:21949026/67‑1 (MQ=255) ttCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTgg < 1:6045046/68‑1 (MQ=255) tCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTggg < 1:20587902/68‑1 (MQ=255) tCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTggg < 1:4778893/68‑1 (MQ=255) aCGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatc > 1:28597513‑M2/1‑53 (MQ=255) aCGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTggg > 1:17077926/1‑66 (MQ=255) cGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTggg > 1:26340691/1‑65 (MQ=255) aTTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgc > 1:18654390/1‑68 (MQ=255) aTTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgc > 1:17910198/1‑68 (MQ=255) tttCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgc < 1:14382728/67‑1 (MQ=255) tttCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgc < 1:26832121/67‑1 (MQ=255) tCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgcgc > 1:18264975/1‑67 (MQ=255) tCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGcc < 1:7588083/68‑1 (MQ=255) tttGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGccc > 1:15728518/1‑67 (MQ=255) ttGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGc < 1:23352712/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:20274868/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:3624267/68‑1 (MQ=255) tGGGCTGCCCAGCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatcgatgggcaga > 1:22920561‑M2/1‑43 (MQ=255) ggTCTGCCCATCGATCCGCGCGGCAATcagcacgccgataatattgccgcgcggatcgatgggcaga > 1:22758296‑M1/1‑27 (MQ=255) ggTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAt < 1:4270720/68‑1 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATcagcccgccgataatattgccgcgcggatcgatgggcagacca > 1:96694‑M1/1‑25 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATcagcacgccgctaatattgccgcgcgggtcgatgggcagacca > 1:25448523‑M1/1‑25 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:2712199/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:26453819/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:10418048/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:2920722/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:8582991/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:9178221/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:3210165/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:1585436/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:18489150/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:18778443/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:11443665/1‑68 (MQ=255) tGCCCATCGATCCGCGCGGCTATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGGATTGaa < 1:27859458/68‑1 (MQ=255) ccATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAgg < 1:24717478/67‑1 (MQ=255) ccATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAgg < 1:13956438/67‑1 (MQ=255) ccATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGc > 1:4381936/1‑68 (MQ=255) aTCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCAt < 1:9425360/68‑1 (MQ=255) gATCCGCGCGGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgt > 1:27559210‑M1/1‑15 (MQ=255) gATCCGCGCGGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgt > 1:11171574‑M1/1‑15 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:26512746/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:23926082/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:28499402/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:16353372/1‑68 (MQ=255) aTCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:24439440/1‑67 (MQ=255) aTCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:5716228/1‑67 (MQ=255) tCCGCGCGGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtga > 1:23134100‑M1/1‑13 (MQ=255) tCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgc > 1:6452914/1‑68 (MQ=255) tCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgc > 1:12181733/1‑68 (MQ=255) ccGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgc > 1:3328483/1‑67 (MQ=255) gcgcgGCAATcagaacgccgataatattgccgcgcggatcgatgggcagacaaaagaaaacgtgaaa > 1:14877257‑M1/1‑10 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc < 1:1297875‑M1/68‑61 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc > 1:15571292‑M1/1‑8 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc < 1:19884628‑M1/68‑61 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc > 1:904628‑M1/1‑8 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc > 1:25542217‑M1/1‑8 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc > 1:21253025‑M1/1‑8 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc > 1:21774486‑M1/1‑8 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc > 1:24078525‑M1/1‑8 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:24148343/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:21453880/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:2607076/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:22248325/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGagcc > 1:10367216/1‑66 (MQ=255) ggCAATcagcacgccgataatatttccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccgg < 1:14060481‑M1/68‑63 (MQ=255) ggCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCt < 1:29246810/67‑1 (MQ=255) cAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggc < 1:3083302‑M1/67‑64 (MQ=255) aaTcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgt < 1:9343355‑M1/68‑66 (MQ=255) aaTATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTAt < 1:19233862/68‑1 (MQ=255) aaTATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTAt < 1:1977229/68‑1 (MQ=255) atatTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATg < 1:20766661/68‑1 (MQ=255) tcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgtag < 1:21150693‑M1/68‑68 (MQ=255) tattatCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgc < 1:1688665/56‑1 (MQ=255) | CAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGC > CP009273/2540648‑2540782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |