| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2845465 = | 219 (0.620) | 15 (0.050) | 8/96 | NT | 5.7% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 311 (1.030) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
GCATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2845537‑2845465‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGA > CP009273/2845525‑2845589 GCATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCG < 1:5332771/68‑1GCATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCG < 1:16102423/68‑1GCATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGC > 1:9882069/1‑67GCATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGC > 1:17866107/1‑67GCATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGC > 1:13884679/1‑67 ATCACCTGTTCCGGCGCGCGATATTCATGAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCG < 1:6190854/68‑1 ATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACCGCGCG < 1:6363929/68‑1 ATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCG < 1:21261901/68‑1 ATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCG < 1:270509/68‑1 ATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCG < 1:10943469/68‑1 ATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGC > 1:21240552/1‑67 ATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGC > 1:9271064/1‑67 ATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGC > 1:20519843/1‑67 ATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGC > 1:18822604/1‑67 ATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGC > 1:3651541/1‑67 ATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGC < 1:16619545/67‑1 ATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGC > 1:17318046/1‑67 ATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATCTTTCCTCGCCATACAACAGCGCG < 1:16555134/68‑1 TCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGC < 1:2197890/68‑1 CACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCC < 1:29158893/68‑1 CACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCC < 1:10277091/68‑1 CACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCC < 1:19761893/68‑1 ACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG > 1:4609772/1‑68 ACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG > 1:1775176/1‑68 ACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG < 1:17370761/68‑1 ACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG > 1:12053849/1‑68 ACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG > 1:15152276/1‑68 ACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG > 1:20558336/1‑68 ACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG > 1:20887410/1‑68 CCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCCTACAACAGCGCGCCGG < 1:8312565/68‑1 CCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGG < 1:2366980/68‑1 CCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG > 1:18063722/1‑67 CCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG > 1:2280741/1‑67 CTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGA < 1:23654791/68‑1 CTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGA < 1:28234288/68‑1 CTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGA < 1:28415011/68‑1 CTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGA < 1:4306506/68‑1 TCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAG < 1:25523269/68‑1 CGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGC < 1:4279171/53‑1 CGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGC < 1:4192846/53‑1 GCGATTTTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGC < 1:1389412/67‑1 GCGATATTCATCAACACACCGCATTATTGTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGC < 1:8909530/67‑1 GCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCA < 1:24705319/68‑1 GCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGC < 1:1030741/67‑1 GCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGC < 1:26091364/67‑1 GATATTCATCAACAACACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCAG < 1:18347966/67‑1 GATATTCATCAACAACACGCATTATTTTACCACGCCCAACAACAGCGCGCCGGAACAGGTGATGCAG < 1:16036877/67‑1 GATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCAG < 1:11936082/67‑1 GATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCAG < 1:27960056/67‑1 GATATTCACCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCAGT < 1:24437148/68‑1 TATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCAGTT < 1:8141430/67‑1 TATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATCCAGTT < 1:6363460/67‑1 TTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCAGTTAAT < 1:17500601/68‑1 TCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCAGTTAATT < 1:5624509/68‑1 GCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACC > 1:5702000/1‑68 GCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACC > 1:19725061/1‑68 GCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACC > 1:21711231/1‑68 CGCGCCGGAACAGGTGATGCAGTTAATTGGGCGTCTGCGCGAACGTGCTTCACATCTCTCTTACACC > 1:2268370/1‑67 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGC < 1:11156484/68‑1 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGC < 1:17942823/68‑1 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGC < 1:17978352/68‑1 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGC < 1:20163921/68‑1 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGC < 1:14268793/68‑1 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGC < 1:12881589/68‑1 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCG > 1:11861133/1‑67 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCG > 1:26146895/1‑67 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCG > 1:10192724/1‑67 GCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCG < 1:6041001/68‑1 GCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCG < 1:13254954/68‑1 CCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGA > 1:24026069/1‑68 CCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGA > 1:8822163/1‑68 GCATCACCTGTTCCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2845537‑2845465‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGA > CP009273/2845525‑2845589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |