| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2845465 = | 219 (0.620) | 15 (0.050) | 8/96 | NT | 5.7% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 311 (1.030) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
Only 100 of 384 total aligned reads displayed.
TTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGT > CP009273/2845398‑2845532 | tAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGCGCCGGATGTCG > 1:25606554‑M1/1‑68 (MQ=255) cggcggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgc < 1:13254954‑M1/4‑1 (MQ=255) cggcggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgc < 1:6041001‑M1/4‑1 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:10011437‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:18408955‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:20970105‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:11247884‑M1/1‑67 (MQ=255) gcggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgc < 1:11156484‑M1/6‑1 (MQ=255) gcggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgc < 1:17942823‑M1/6‑1 (MQ=255) gcggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgc < 1:20163921‑M1/6‑1 (MQ=255) gAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC < 1:16709493‑M1/68‑1 (MQ=255) gAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC > 1:572692‑M1/1‑68 (MQ=255) gAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC > 1:25161550‑M1/1‑68 (MQ=255) aaGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC > 1:13653373‑M1/1‑67 (MQ=255) ggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgcgc > 1:19725061‑M1/61‑68 (MQ=255) ggtgtaagagagatgtgaagcacgttcgcgcagacgcccaattaactgcatcacctgttcCGgcgcg > 1:2268370‑M1/61‑67 (MQ=255) cgcCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCG < 1:11955748‑M1/66‑1 (MQ=255) aGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCG < 1:6738959‑M1/67‑1 (MQ=255) ccGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC > 1:21673557‑M1/1‑64 (MQ=255) cGAAGCACGCGACACTCTCGAGGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:5036468/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:19190757/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:18673252/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:26747710/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:24362470/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:17675512/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:22338774/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:4486212/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:12687381/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:6176753/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:15087746/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:9169578/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:8761676/66‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:15780416/66‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:25331632/66‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:25819370/66‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:27269698/66‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:5301088/66‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:17333664/66‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:24080770/66‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:15589992/66‑1 (MQ=255) cGAAGCACGCGACACTCTCAACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:6965265/68‑1 (MQ=255) aGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgttg < 1:23421621/67‑1 (MQ=255) gCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTa > 1:12970816/1‑68 (MQ=255) cACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTAt > 1:3291413/1‑68 (MQ=255) acacTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAg > 1:16505534/1‑68 (MQ=255) cacTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAg < 1:23945537/67‑1 (MQ=255) acTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGa < 1:26176372/68‑1 (MQ=255) acTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGa < 1:20460302/68‑1 (MQ=255) cGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaat < 1:24597441/68‑1 (MQ=255) cGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataat > 1:10219821/1‑68 (MQ=255) cGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataat > 1:18169058/1‑68 (MQ=255) cGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataat > 1:16194244/1‑68 (MQ=255) gCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataat > 1:17204988/1‑67 (MQ=255) ccTTACAAAACATGTTTGACGTTGAGCCGGCTGTCGGCGCGCgagattcatcaacaaaacgcattatt > 1:13901289‑M1/1‑42 (MQ=255) ccTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGc > 1:3951845/1‑68 (MQ=255) ccTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGc > 1:4269164/1‑68 (MQ=255) cTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGc < 1:1422300/67‑1 (MQ=255) tACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:21954240/40‑1 (MQ=255) tACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGaaaa < 1:27871011/58‑1 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt > 1:29028186/1‑68 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt > 1:12525981/1‑68 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt < 1:18285893/68‑1 (MQ=255) aaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgtt < 1:24833613/68‑1 (MQ=255) aaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgtt < 1:25098211/68‑1 (MQ=255) aaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgtt < 1:12378370/68‑1 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:27763973/1‑68 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:12067403/1‑68 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:2969659/1‑68 (MQ=255) caagTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTAAGGATATGAAAAATAATGCCATATGTtga > 1:9643230/4‑68 (MQ=255) cATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtga < 1:2636919/68‑1 (MQ=255) cATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtga > 1:26088522/1‑68 (MQ=255) cATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtga < 1:4662666/68‑1 (MQ=255) cATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtga < 1:21088374/68‑1 (MQ=255) tGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtgatg > 1:10897946/1‑68 (MQ=255) aattaactgcatcacctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtgatga < 1:5624509‑M1/47‑1 (MQ=255) tttGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGaa > 1:28003790/1‑68 (MQ=255) tttGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGaa > 1:15005738/1‑68 (MQ=255) attaactgcatcacctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGaa < 1:17500601‑M1/48‑1 (MQ=255) ttGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGaa < 1:10063477/67‑1 (MQ=255) ttGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGaa < 1:14645368/67‑1 (MQ=255) gTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgc < 1:19502422‑M2/68‑3 (MQ=255) gTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgc < 1:8009336‑M2/68‑3 (MQ=255) gcatcacctgttcCGGCGCGCTGTTGTATGGCGAGGAACAATAATGCGGTGTGTTGATGAATATcgc < 1:8909530‑M1/54‑1 (MQ=255) gAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcg > 1:1603606‑M2/1‑63 (MQ=255) gAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcg > 1:10671907‑M2/1‑63 (MQ=255) gAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcg > 1:20621327‑M2/1‑63 (MQ=255) gAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcg > 1:11619017‑M2/1‑63 (MQ=255) gCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgcc < 1:21177947‑M2/68‑8 (MQ=255) cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgccg > 1:26311782‑M2/1‑59 (MQ=255) cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgcc > 1:14452909‑M2/1‑59 (MQ=255) ggATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa < 1:7743257/68‑1 (MQ=255) ggATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa < 1:12242129/68‑1 (MQ=255) tGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgccgacat > 1:11658921‑M2/1‑55 (MQ=255) tGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACa > 1:8336002/1‑68 (MQ=255) tcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:23654791‑M1/66‑1 (MQ=255) tcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:28234288‑M1/66‑1 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:28445160/68‑1 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:26490756/68‑1 (MQ=255) gTCGGCGCGCTGGTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:10400209/68‑1 (MQ=255) CGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAgg > 1:2280741‑M1/1‑67 (MQ=255) | TTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGT > CP009273/2845398‑2845532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |