New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3999963	455 (1.290)	18 (0.060)	8/98	NT	5.7%	coding (740/1830 nt)	recQ	ATP‑dependent DNA helicase
	?	CP009273	= 4000007	195 (0.630)					coding (784/1830 nt)	recQ	ATP‑dependent DNA helicase

CCGCTCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3999890‑3999963 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcgcTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGATAAT  <  CP009273/4000007‑3999941                                                                                                                                               CCGCTCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAG                                                                           <  1:22537610/68‑1  CGCTCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGC                                                                          <  1:20012083/68‑1   GCTCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCTGTAAGTCAGGCATTATCTACTGCAACAGCC                                                                         <  1:16119927/68‑1     TCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGC                                                                       <  1:13051867/68‑1      CGATCCGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCG                                                                      <  1:11750146/68‑1      CGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCG                                                                      <  1:238796/68‑1      CGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCG                                                                      <  1:1251551/68‑1                                      GCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGT                                      <  1:10351137/68‑1                                                AGGCATTATCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACT                            >  1:28652404/1‑68                                                 GGCATTATCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTT                           >  1:19334079/1‑68                                                 GGCATTATCTACTGCAACAGCCGCGCTAATTACCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTT                           >  1:12423792/1‑68                                                    ATTATCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTC                         >  1:21949659/1‑67                                                         CTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                    >  1:21519898/1‑67                                                         CTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                    >  1:1521854/1‑67                                                         CTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                    >  1:15760804/1‑67                                                          TACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                    >  1:21866194/1‑66                                                          TACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGGGTCGTCGACTTTCGGGCGGC                  >  1:27205689/1‑68                                                           ACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                    >  1:1610468/1‑65                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT              >  1:21471780/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT              >  1:18506015/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT              >  1:3766965/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT              >  1:21286784/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT              >  1:7673684/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT              >  1:13189113/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCGGTT              >  1:6784606/1‑68                                                                AACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGC            >  1:24126886/1‑68                                                                  ctGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGGGTCTTCTACTTTCGCGCGGCTGTTGC            <  1:12148154/64‑1                                                                  agGCCGCGCTAATTCCCTTGCGTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGC            <  1:739006/64‑1                                                                  CAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAG          >  1:26431939/1‑68                                                                   AGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGT         >  1:4443108/1‑68                                                                    GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCTGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA        <  1:21527496/68‑1                                                                    GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA        <  1:19585570/68‑1                                                                    GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA        >  1:24859781/1‑68                                                                    GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA        <  1:4283115/68‑1                                                                    GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA        >  1:16592710/1‑68                                                                     CCGCGCTAGTTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG       >  1:3937719/1‑68                                                                     CCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG       >  1:8324977/1‑68                                                                      CGCGCTATTTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG       <  1:23255772/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      <  1:7139768/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      <  1:5386656/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      <  1:26242060/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      <  1:3605413/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      <  1:8519874/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      <  1:8593268/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      >  1:10777837/1‑68                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      <  1:23372322/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      <  1:11242197/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      <  1:11844603/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      >  1:2069048/1‑68                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      <  1:20523243/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      >  1:20125246/1‑68                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      <  1:18000648/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      <  1:23707549/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      >  1:14038013/1‑68                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      <  1:14439335/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA      <  1:14264376/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG       <  1:17003115/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG       <  1:11980670/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG       <  1:14236297/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG       <  1:15890916/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG       <  1:28484629/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG       <  1:22164379/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG       <  1:23289478/67‑1                                                                         GCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTT                                 <  1:25581566/38‑1                                                                          CTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGATAAT  <  1:4787503/68‑1                                                                                                                                               CCGCTCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3999890‑3999963 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcgcTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGATAAT  <  CP009273/4000007‑3999941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.